barSeed - Barley Seed Development Database

Probe CUST_7380_PI390587928

Source Contig U35_20032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7380_PI390587928	Hv_44K_v2	AAGAGTGACACAAGTGATTCAGGGTTATGAAAGCCACTCACTCAAGTCAAAATTTGAATC	1286	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5484.5	3153	7e-23	1105 - 1164	98	59 / 60	plus	ABC04978
MLOC	MLOC_5484.4	3265	7e-23	1019 - 1078	98	59 / 60	plus	ABC04978
MLOC	MLOC_5484.10	1117	7e-23	328 - 387	98	59 / 60	plus	None
MLOC	MLOC_5484.8	3320	7e-23	996 - 1055	98	59 / 60	plus	ABC04978
MLOC	MLOC_5484.9	3212	7e-23	996 - 1055	98	59 / 60	plus	ABC04978
MLOC	MLOC_5484.1	3359	7e-23	1031 - 1090	98	59 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.2	3251	7e-23	1031 - 1090	98	59 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.7	3284	7e-23	1001 - 1060	98	59 / 60	plus	ABC04978 ABC35339
MLOC	MLOC_5484.3	3060	7e-23	1030 - 1089	98	59 / 60	plus	ABC04978
MLOC	MLOC_5484.6	3576	7e-23	1007 - 1066	98	59 / 60	plus	ABC04978 ABC35339
JLOC1	JLOC1_3530.3	3795	4e-23	1033 - 1092	98	59 / 60	plus
JLOC1	JLOC1_3530.2	3687	4e-23	1033 - 1092	98	59 / 60	plus
JLOC1	JLOC1_3530.1	3687	4e-23	1033 - 1092	98	59 / 60	plus
Harvest35	U35_20032	1346	3e-25	1287 - 1346	100	60 / 60	plus

Contig Sequence (1346 bp)

>U35_20032 1346 Hv_44K_v2
AGCTCAGCCCACCCCTCCCCTCCCCTCCCTCCTTTCCCTTCCCTTCCCTCCCCACACACG
CGGTCGGACGCCCCCTTCCCCTCCTCACTCTCGCCTCCCCACCGCCGACGGACGAGCGAG
CCCCCTCCCGCTCCGGCTCCCTCTCCCGCCACCGGATCACCGCTCCCGCGTCGGCGGATC
TACGCGCGCGGCGCGGGGACCCCCCACTTCGTCGGCGGCCCCACCGGCGCCCCTTCCCCG
GGCAGGGGCCCTTGCTGTACAGCGGAGCCGTTGCTGCTATTTCATCACCTTCAAATCGAG
CCCTGGTAAAGTTGCTTCCAAATGTCGACCCCGAAAGTGGTGGATCCTGCTTTCCAAGGG
GCTGGCCAAAAAGTTGGGATAGAAATATGGCGCATTGAAGATTTTAAGCCAGTTGCATTG
CCAAAATCTGATTATGGTAAATTCTATTCTGGAGATTCATATATAGTTTTGCAGACGACT
TCTCCTAAGGGTGGTGCATATCTGTACGACGTCCACTTCTGGATTGGGAAAGACTCAAGC
CAAGATGAAGCTGGCACTGCAGCAATCAAGACGGTTGAACTTGATTCTGTACTTGGGGGT
CGTGCAGTCCAGTATAGGGAACTCCAAGGTTATGAATCTGACAAGTTCCTGTCATACTTC
AAACCTTGCATTATACCTATGGAGGGTGGTTTCGCCTCTGGGTTCAAGACGCCAGAAGAG
GAGACCTTTGAAACACGGTTATATATTTGCAAAGGGAAGAGAGCTATTAGAATTAAGCAG
GTTCCCTTTGCACGGTCATCATTAAACCATGATGATGTGTTTATCTTAGATACTGAAAAG
AAAATTTATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCTAAATCACTGGAA
GTGATCCAACATTTAAAGGAGAAGTACCATGGGGGCGTGTGTGATGTTGCAATCGTTGAT
GATGGGAAACTACAAGCGGAATCAGACTCTGGTGAATTCTGGGTCCTTTTTGGAGGTTTT
GCACCTATTGGGAAAAAAACTGTTAGTGATGACGATGTTGTACTGGAAACTACAGCACCC
AAGCTGTACAGTATCAACGGCGGTGAACTAAAGTTTGAAGATATACCTCTTACAAAAGCA
GTCCTTGAGAACACAAGATGTTTCTTACTTGACTGTGGGGCTGAAATGTTTGTATGGGTT
GGTCGGGTAACACAACTCGAGGACAGAAAAGCTGCCACTAAAGCCATTGAGGAGTTCATC
ATTAATCAGAAAAGGCCAAAGACGACAAGAGTGACACAAGTGATTCAGGGTTATGAAAGC
CACTCACTCAAGTCAAAATTTGAATC

Homology of Contig U35_20032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g24220.2	637	protein\|villin protein, putative, expressed
Brachypodium v1_2	Bradi2g60910.1	982
Arabidopsis v10	AT2G41740.1	976	\| Symbols: VLN2, ATVLN2 \| villin 2 \| chr2:17410962-17416878 REVERSE LENGTH=976