barSeed - Barley Seed Development Database

Probe CUST_7374_PI390587928

Source Contig U35_26620

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7374_PI390587928	Hv_44K_v2	ATATTCAGAGAGTTGTGCCCCATATGGTTCTGCTGATGTTAGCGAAATGACTGGTTCAGC	676	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.585	0.391	0.563	1.184	1.231	1.665
Raw	14.476	14.760	20.192	61.889	23.409	35.008

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15510.1	2005	2e-24	1256 - 1315	100	60 / 60	minus	ABC24074
JLOC1	JLOC1_10642.1	2244	8e-25	824 - 883	100	60 / 60	plus
Harvest21	ABC21731	764	3e-25	677 - 736	100	60 / 60	plus
Harvest35	U35_26620	764	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_26620 764 Hv_44K_v2
GAACACAAGGGAAAAGAAAAAAAAATTAAAAGAACAGAGAAGAAGGAAGAAAGAAAGAAC
GAACAGCACCTACCGAGCAAGCCAGCCTCCGTTGGTTCTTCTTCTTCGGCTTCCACATGG
GCTGCAGAATTGTTCCCCTCCGGGTCTGAACAGATTTACGTACCACCCAAGAACCGCCCC
TTGATTCCCCCTCTCCCCCTTCTTTTTCTGTTCGCGGATTACTGCCTGCTACTCTACTAG
ACCCAAGAACTGCTCTGTTTTTCCGTGTTTCTCTGGCTGGGAATTCCTCCGGTTCTTCCT
CGTTTTGCTCGCGGGGGCCGAGGAGCGCAGGAGGCATGGGAAAGGAGGGCCCTTGCCGTC
ATTGCGGCGTCACAAGCACTCCACTTTGGCGAAATGGGCCACTAAATAAGCCAGTGCTGT
GCAATGCATGTGGCTCGAGATGGAGAACAAAGGGTTCCTTGGAGAATTACACACCAATGC
ATTCTCGTGACGATATTGATGCTGAGCAACCTAGAGTTAGCAAGCTGAAGCCGCCGACAT
TGAGGCTGAAGGAACAGAGGCAAGTAAAGAAAAAGCCAAGCCACGGCATAAGGGAGAATG
GAGCATTTTCTGATCAAAACTTCTGGAAGATGGGGGATGCGGACCCAAGTCGATCTAGTT
CAGGATCAGCACTATCATATTCAGAGAGTTGTGCCCCATATGGTTCTGCTGATGTTAGCG
AAATGACTGGTTCAGCGCAATCGCATGCTTGGGAGTCATTGGTA

Homology of Contig U35_26620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46020.2	363	1e-71	protein\|GATA zinc finger domain containing protein, expressed
Brachypodium v1_2	Bradi5g17370.2	414	5e-76
Arabidopsis v10	None