barSeed - Barley Seed Development Database

Probe CUST_7372_PI390587928

Source Contig U35_26621

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7372_PI390587928	Hv_44K_v2	CTGCGCGCCTTCGCCAGGACCGGGATCGAGCTCTACGTCGGCGTGCCCGACCAGTGCCTC	328	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75464.3	2445	2e-24	236 - 295	100	60 / 60	plus	ABC12144 ABC12145
MLOC	MLOC_75464.4	1650	2e-24	333 - 392	100	60 / 60	plus	ABC12145
MLOC	MLOC_75464.1	1773	2e-24	429 - 488	100	60 / 60	plus	ABC12144 ABC12145
MLOC	MLOC_75464.2	1976	2e-24	598 - 657	100	60 / 60	plus	ABC12144 ABC12145
JLOC1	JLOC1_50343.1	1877	8e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_26621	418	3e-25	329 - 388	100	60 / 60	plus
Harvest35	U35_31991	422	1e-23	300 - 359	98	59 / 60	plus

Contig Sequence (418 bp)

>U35_26621 418 Hv_44K_v2
ATCACTCTCCCCCGGCCCAAAACCTTCGCCCGTGCAAATCTCACCTCGCCCTCCCTCCCT
CCGCCCCGCTCCGCTCCTACCTCCAATAATGCCGCTCCGCGACGGCCTCCGGCGGCGGCT
CCAGCGCGCAGGCTGCATCCATCTCGCCGCGGCGCTGTGCGTGCTCGCGCTCGCGGTCGC
GTCGGACGCCGCGCCGGCGCCGGTGTCGCTGCTGGGCATCAACTACGGCCGCGTGGGGAA
CAACCTGCCGCCGCCGCAGGCCGCGCTGCCCCTGCTCCAGGGCCTCGGCATTGCGCGCGT
GCGGCTCTACGACCCCGAGCCTGGCGTGCTGCGCGCCTTCGCCAGGACCGGGATCGAGCT
CTACGTCGGCGTGCCCGACCAGTGCCTCGCCGCGGTCGCCGAGCCGGCCGGCGCCGCG

Homology of Contig U35_26621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None