barSeed - Barley Seed Development Database

Probe CUST_7364_PI390587928

Source Contig U35_26629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7364_PI390587928	Hv_44K_v2	AAGGGGAAGAAGGACACCACGTGTTGGTTCAGTTTCTGCACTCTGCTTCGGCCACCGTGA	244	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57423.1	3587	2e-24	1831 - 1890	100	60 / 60	minus	ABC18894 ABC24430
JLOC1	JLOC1_37217.1	2476	8e-25	1776 - 1835	100	60 / 60	minus
Harvest21	ABC26157	449	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_26629	450	3e-25	245 - 304	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_26629 450 Hv_44K_v2
GCTTGTCTTGTCACCATGGTTGCCGAGATGGTAGGAGCGGCGGCGGTGGGACTGGGAGGG
GGCGGCCATGGCGAGGCGCTGATGGTGCTCGAGGCTCTGGCGTCGTCTTGTCTGAGCTGC
TCCGTCCCGCAGTTCCCGACCAAGTGGAATTCCCTCAAGGACAAGCTCCGGCAGCTCTGC
TCCGGGCTCAGCTTGCTGCGCGGCAATGGCGGCGACGGCGAGGGGGCAGAGGAGGTGGAG
GAGGAAGGGGAAGAAGGACACCACGTGTTGGTTCAGTTTCTGCACTCTGCTTCGGCCACC
GTGAGGGGCATCCTGGACGTGGCCTCGCAGTGCAGCGACGGCACGTACCGGGGCGGGCGG
CTGCGCCTGCGGAGCGACATGGACAGCCTCAGCGCCAAGCTGGAGGCGCACGTGCGGCAG
CTCAAGGAGATGGCCTCCACCGGCGCGTCC

Homology of Contig U35_26629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None