- Probe CUST_7362_PI390587928
- Source Contig U35_38601
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7362_PI390587928 | Hv_44K_v2 | AAGATCTAGTGGTCGGGCAAACAACTGAAGAAACACCAAAGAAGGAGGTGGCTTCAAAGA | 357 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.659 | 1.440 | 1.171 | 0.699 | 0.233 | 0.275 |
| Raw | 19103.300 | 25231.447 | 18089.700 | 17221.800 | 1988.900 | 2596.930 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44617.1 | 2029 | 6e-24 | 1426 - 1484 | 100 | 59 / 59 | plus | ABC03819 ABC03821 |
| MLOC | MLOC_44617.2 | 1944 | 6e-24 | 1444 - 1502 | 100 | 59 / 59 | plus | ABC03819 ABC03821 |
| JLOC1 | JLOC1_28927.4 | 2154 | 3e-24 | 1325 - 1383 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_28927.3 | 2159 | 3e-24 | 1330 - 1388 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_28927.2 | 2173 | 3e-24 | 1344 - 1402 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_28927.1 | 2196 | 3e-24 | 1367 - 1425 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC03821 | 633 | 1e-24 | 520 - 578 | 100 | 59 / 59 | minus | ABC03821 |
| Harvest21 | ABC03820 | 822 | 1e-24 | 204 - 262 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC03819 | 2186 | 1e-24 | 1420 - 1478 | 100 | 59 / 59 | plus | ABC03819 |
| Harvest35 | U35_38601 | 728 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47133 | 652 | 1e-24 | 352 - 410 | 100 | 59 / 59 | minus | |
| Harvest35 | U35_14397 | 2191 | 1e-24 | 1425 - 1483 | 100 | 59 / 59 | plus |
Contig Sequence (728 bp)
>U35_38601 728 Hv_44K_v2 GGGCCTCTCTCTCCATCCCCGACCTCTCGTGGCCGCTGCGAAGAAAAGGAGCTTATCATG GCTTCAAAACGTATCCTGAAGGAACTCAAGGACTTGCAGAAAGATCCTCCGACATCATGC AGTGCAGGTCCTTCTGGCGAGGATATGTTCCATTGGCAGGCAACCATCATGGGCCCTCCT GATAGTCCCTATGCTGGAGGTGTTTTCTTGGTGAATATCCATTTCCCCCCGGACTACCCC TTCAAGCCTCCGAAGGTATCGTTCAAGACAAAGGTCTTCCATCCGAACATCAATAGCAAT GGGAGCATATGCCTCGACATTCTGAAGGAGCAATGGAGTCCTGCTTTGACGATCTCTAAG ATCTAGTGGTCGGGCAAACAACTGAAGAAACACCAAAGAAGGAGGTGGCTTCAAAGAAGA GGAAGCACCAAGAGGAAGAACCTACCGTGGAGGCAGCTGAAAAGGATGGTGAGCAGGAGA AAGAGAAGTCCAAGAAGAAGAAGAAGAAATCCAAGGACACCGAGGAGACTCCCGCAGCTG ATGCTGATGCTAGCGAGAAGAAAAAGAAGAAGAAGAGCAAGGAAGCCGAGGAGACCCCTG CAGCTGACGCGGACGGCGAGAAGAAGAAAAAGAAGAAGAAATCAGACGCCGAGGACACCC CCATGGAGACTGACGTGTCTGCCAAGAAGAAGAAAAAGAAGAAGCATGCTGACGAGTGAG CAGCACGG
Homology of Contig U35_38601 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g60410.2 | 149 | 2e-70 | protein|ubiquitin-conjugating enzyme, putative, expressed |
| Brachypodium v1_2 | Bradi2g53430.1 | 149 | 7e-71 | |
| Arabidopsis v10 | AT3G08690.1 | 148 | 9e-67 | | Symbols: UBC11, ATUBC11 | ubiquitin-conjugating enzyme 11 | chr3:2641487-2642489 FORWARD LENGTH=148 |