- Probe CUST_7361_PI390587928
- Source Contig U35_38602
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7361_PI390587928 | Hv_44K_v2 | TCCAAGCTCGCTGCCAATGCGTTCTTGGCCCAGAGGATTTCCTCTGTGAATGCCATGTCC | 599 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.256 | 0.223 | 1.088 | 2.089 | 1.027 | 1.015 |
| Raw | 135.125 | 175.145 | 812.208 | 2438.202 | 425.597 | 459.986 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63077.3 | 1671 | 7e-23 | 744 - 803 | 98 | 59 / 60 | plus | ABC02148 ABC47512 ABC49823 |
| MLOC | MLOC_63077.2 | 1925 | 7e-23 | 902 - 961 | 98 | 59 / 60 | plus | ABC02148 ABC47512 ABC49823 |
| MLOC | MLOC_63077.1 | 2750 | 7e-23 | 968 - 1027 | 98 | 59 / 60 | minus | ABC02148 ABC47512 ABC49823 |
| JLOC1 | JLOC1_41310.2 | 2180 | 4e-23 | 922 - 981 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_41310.1 | 2171 | 4e-23 | 913 - 972 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02145 | 1770 | 1e-23 | 715 - 774 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_38602 | 692 | 3e-25 | 600 - 659 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_51 | 1999 | 1e-23 | 747 - 806 | 98 | 59 / 60 | plus |
Contig Sequence (692 bp)
>U35_38602 692 Hv_44K_v2 CTCTGCGGCAGTGTGCTTGTCAAGATCTCCCTCGGCTCTTGAGATCTGGTTAAGCGGACA AGATGGTGAAGATCTGCTGCATCGGAGCTGGCTATGTCGGCGGCCCAACAATGGCCGTCA TTGCCGTCAAGTGCCCAGCAATTGAGGTTGTTGTTGTTGACATCTCCAAGCCTCGCATTG ACGCTTGGAACAGCGACACACTCCCAATTTACGAGCCTGGCCTCGATGAGGTTGTCAAGG CGTGCAGGGGCAAGGCTGCCGACCTCACCTACTGGGAGAGCGCTGCCCGGATGATCGCCG ATGTGTCCAAGTCCGACAAGATCGTCGTTGAGAAGTCCACTGTCCCTGTCAAGACTGCAG AGGCCATTGAGAAGATCTTGACTCACAACAGCAAGGGCATCAACTACCAGATCCTCTCCA ACCCGGAGTTCCTGGCCGAGGGCACGGCCATCGACGACCTGTTCAAGCCTGACAGGGTAC TTATCGGTGGTCGGGAGACCCCCGAGGGCAGGAAGGCGGTTCAGGCTCTCAAGGAGGTGT ACGCCAACTGGGTTCCTGAGGAGAACATCATCACCACCAACCTGTGGTCTGCTGAGCTCT CCAAGCTCGCTGCCAATGCGTTCTTGGCCCAGAGGATTTCCTCTGTGAATGCCATGTCCG CGCTCTGCGAGGCTACCGGTGCTAACGTGTCT
Homology of Contig U35_38602 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g25700.1 | 481 | 7e-131 | protein|UDP-glucose 6-dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi1g08120.1 | 481 | 4e-135 | |
| Arabidopsis v10 | AT3G29360.1 | 480 | 2e-121 | UDP-glucose 6-dehydrogenase family protein | chr3:11267375-11268817 REVERSE LENGTH=480 |