barSeed - Barley Seed Development Database

Probe CUST_7354_PI390587928

Source Contig U35_14650

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7354_PI390587928	Hv_44K_v2	CAATGTTTAACCGACTATGGTAAGATAATAACAGCCTCAGAGCAAGTTCTTTCTTTTTCT	720	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358522	790	2e-24	730 - 789	100	60 / 60	plus	ABC01762 ABC01765 ABC33810
JLOC1	JLOC1_22779.1	1265	8e-25	1046 - 1105	100	60 / 60	plus
Harvest21	ABC01762	796	1e-24	721 - 779	100	59 / 59	plus	ABC01762
Harvest21	ABC33810	612	2e-21	18 - 70	100	53 / 53	minus	ABC33810
Harvest21	ABC01765	838	2e-21	19 - 71	100	53 / 53	minus	ABC01765
Harvest35	U35_14650	823	3e-25	721 - 780	100	60 / 60	plus
Harvest35	U35_38032	612	2e-21	18 - 70	100	53 / 53	minus
Harvest35	U35_14653	693	2e-21	623 - 675	100	53 / 53	plus

Contig Sequence (823 bp)

>U35_14650 823 Hv_44K_v2
GGTGCGCTTGATCTTATCGGTGGTGGCAGTACTCTACAAGCTAGTAGGTGACACAAGTTC
TTGCACCGGTCAGATCCACCTACAAGATGCTGGACAAGCTGTGGGACGACGTGGTGGCCG
GGCCTCGGCCGGAGACGGGCCTCGACAAGCTCCGCCGGGCCGCCGCCACCCAGCCCCTCG
CCATCAACACAGCTGCGGGGGAGGCGATGAAGCCGTCGCAGTCGATGCCGACGACCCCGA
CCACGCCGGTGACGCCGTCGTCGTCGTCGTCGACGCCGCCGCGCGGCGGCAGCGTGTGGC
GGAGCGTCTTCCACCCCGGGAGCAACCTCGCCACCAAGGGCCTCGGCGCCAACCTCTTCG
ACCGCCCCCAGCCCAACTCCCCCACCGTCTACGACTGGCTTTACAGCGACGAGACCAGGA
CCAGGAGCAACCACCGCTAAAGAAGAGGAAGACGGGGGTGCTCGATCGACAACTTCGATC
TGGGACGACGCCATGTTTGCTGCTCTTTTGGTTATCTAAATCCTGCGTACGTACGTTGCT
GTCCGAGGCTGCATGTAGTTTCTCCTAAGCTTAGTAGTACTACTATACTAGTGCTTGTAA
CTTTCTTTTGTTACCTCAGTTTGCTCTTTGCTCGCCGCATGCTAGCGAGTGATGGGTGTA
TGTGTGTACTTTGTGTGCGCTCCATGTGTAAATTCTCTCGTGTGGGTGGTGTGGTCTTCT
CAATGTTTAACCGACTATGGTAAGATAATAACAGCCTCAGAGCAAGTTCTTTCTTTTTCT
AAAAAAAAAAAAAAAAAAAAAACAAAAAAGCTCGAGGGGGGGC

Homology of Contig U35_14650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None