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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7351_PI390587928Hv_44K_v2CTCAATGTTTAACCGACTATGGTAAGATAATAACAGCCTCAGAGCAAGTTCTTTCAAAAA620GeneList: lightgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4370.9350.5311.0611.5102.559
Raw 62.29762.31832.563107.85351.19994.529



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3585227909e-22728 - 78210055 / 55plus ABC01762 ABC01765 ABC33810
MLOCMLOC_35254.19189e-221 - 5510055 / 55minus ABC01762 ABC01765 ABC33810
JLOC1JLOC1_22779.112655e-221044 - 109810055 / 55plus
Harvest21ABC338106123e-2513 - 7210060 / 60minusABC33810
Harvest21ABC017658383e-2514 - 7310060 / 60minusABC01765
Harvest21ABC017627962e-22719 - 77310055 / 55plusABC01762
Harvest35U35_380326123e-2513 - 7210060 / 60minus
Harvest35U35_146536933e-25621 - 68010060 / 60plus
Harvest35U35_146508232e-22719 - 77310055 / 55plus



Contig Sequence (693 bp)

>U35_14653 693 Hv_44K_v2
CTCCGCCGGGCCGCCGCCACCCAGCCCCTCGCCATAACACAGCTGCGGGGGAGGCGATGA
AGCCGTCGCAGTCGATGCCGACGACCCCGACCACGCCGGTGACGCCGTCGTCGTCGTCGT
CGACGCCGCCGCGCGGCGGCAGCGTGTGGCGGAGCGTCTTCCACCCCGGGAGCAACCTCG
CCACCAAGGGCCTCGGCGCCAACCTCTTCGACCGCCCCCAGCCCAACTCCCCCACCGTCT
ACGACTGCATGCATGGAAATAATAACGGTGCAACGTACGTGCGTACGTTTGATGTCCAGG
CTTTACAGCGACGAGACCAGGACCAGGAGCAACCACCGCTAAAGAAGAGGAAGACGGGGG
TGCTCGATCGACAACTTCGATCTGGGACGACGCCATGTTTGCTGCTCTTTTGGTTATCTA
AATCCTGCGTACGTACGTTGCTGTCCGAGGCTGCATGTAGTTTCTCCTAAGCTTAGTAGT
ACTACTATACTAGTGCTTGTAACTTTCTTTTGTTACCTCAGTTTGCTCTTTGCTCGCCGC
ATGCTAGCGAGTGATGGGTGTATGTGTGTACTTTGTGTGCGCTCCATGTGTAAATTCTCT
CGTGTGGGTGGTGTGGTCTTCTCAATGTTTAACCGACTATGGTAAGATAATAACAGCCTC
AGAGCAAGTTCTTTCAAAAAAAAAAAAAAAAAA



Homology of Contig U35_14653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None