barSeed - Barley Seed Development Database

Probe CUST_7350_PI390587928

Source Contig U35_14654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7350_PI390587928	Hv_44K_v2	GTTTTAGCCTATGCACTTCCCTAAATCAATTATAGCAACGTTGGTGCCATTTTTGGGCTT	1431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66511.1	1783	2e-24	24 - 83	100	60 / 60	minus	ABC02031 ABC38863 ABC39344 ABC49830
MLOC	MLOC_66511.2	1537	7e-23	1469 - 1528	98	59 / 60	plus	ABC02031 ABC38863 ABC39344 ABC49830
JLOC1	JLOC1_43839.1	1930	8e-25	1701 - 1760	100	60 / 60	plus
Harvest21	ABC38863	193	3e-25	21 - 80	100	60 / 60	minus	ABC38863
Harvest21	ABC02029	1716	3e-25	1635 - 1694	100	60 / 60	plus
Harvest35	U35_14654	1542	3e-25	1432 - 1491	100	60 / 60	plus

Contig Sequence (1542 bp)

>U35_14654 1542 Hv_44K_v2
AGGCAGGCAGACAGACAGGGGGCGCTTATAAATACGGCTCAGATCTGGGGAGGGCTTTCC
ATCCACCTCGTCTCGTCGGTCTAATCCGATTCAAACGCGCAGCTTCCTCGTGTCCGAACT
AAGCCCCAATCCCACCACCGCCGCCGCTGGTGCTCGGCGCGATGGCGCAGAAGGACGCCA
CCAATGGCAACGGCGCCACCACGCGCCCGCCGCCCACGCCCTCCCCCATCCGCTTCTCCA
AGTTCTTCCAGGCCAACATGCGGATCCTGGTCACCGGCGGAGCTGGCTTCATCGGCTCGC
ACCTCGTCGACAAGCTCATGGAGAACGAGAAGAACGAGGTCATTGTTGCTGACAACTTTT
TCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGCCACCCAAGATTTGAGCTCATCC
GTCACGATGTCACCGAACCACTGCTCGTGGAGGTTGACCAAATCTATCACCTTGCTTGCC
CTGCCTCACCAATCTTCTACAAGCACAACCCTGTCAAGACCATCAAGACGAATGTCATTG
GGACCTTGAACATGCTTGGACTTGCAAAGAGAGTTGGAGCTAGAATATTGTTGACTTCGA
CCTCTGAAGTTTATGGTGATCCTCTTGAGCATCCTCAGACGGAGGCCTACTGGGGCAATG
TTAACCCAATTGGAGTCAGGAGCTGCTACGATGAGGGTAAGCGTGTAGCTGAGACACTGA
TGTTCGACTACCACAGGCAGCACGGCATTGAGATCCGTATTGCCAGGATTTTCAACACCT
ATGGACCTAGGATGAACATTGATGATGGCCGTGTTGTTAGTAACTTCATTGCTCAGGCCA
TACGTGGTGAAGCCCTGACTGTCCAGAAGCCAGGAACACAGACTAGGAGCTTCTGCTACG
TTGCTGATATGGTCAATGGTCTTATGAAGCTGATGAATGGAGACAACACTGGACCCATTA
ACATTGGGAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAACGTGAAGGAGTTGA
TCAACCCAGAGGTGACAGTGACGATGACTGAGAACACTCCTGATGACCCTCGCCAGAGGA
AGCCTGACATCACAAAGGCAAAGGAGGTTCTTGACTGGGAGCCCAAGGTCGTCCTACGTG
ACGGCTTGGTGCTCATGGAGGACGACTTCCGGGAGCGTTTGGCAGTGCCCAAGAAGGCCA
AGGCCTAAGGCCACTTCCCTGCGTTTGGCGTACATCACCAATTTGCCAGAGCATACTCAT
AGTTGGGTGGGTTCGTCAATATTCGTTGCTGTGTTTCGTTACGGAATTTGAGTTCCAATA
AACCAATTACACCTTTGTCGTTCACTTGAAAGATTGTATTATTAGAAACTTTATATACAA
GGCCTGGCTGTTTGTATTACTCCCGCTTTTTGCGGAACTTGTGGTCCTAATGTTTTAGCC
TATGCACTTCCCTAAATCAATTATAGCAACGTTGGTGCCATTTTTGGGCTTGTTAAAAAA
AAAAAAAAAAAAAAAAGGGCACATGTGCTGGAGCTGCAGGTC

Homology of Contig U35_14654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g16980.1	351	protein\|NAD dependent epimerase/dehydratase family domain containing protein, expressed
Brachypodium v1_2	Bradi1g66440.1	348
Arabidopsis v10	AT2G28760.2	343	\| Symbols: UXS6 \| UDP-XYL synthase 6 \| chr2:12336469-12338642 REVERSE LENGTH=343