barSeed - Barley Seed Development Database

Probe CUST_7348_PI390587928

Source Contig U35_14656

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7348_PI390587928	Hv_44K_v2	CACGTTGAGCTAATTAAAGTGCAAGCTCTACTGCAAGGTGGGCGTCTTGTAGATAAAAAA	559	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75010.2	1997	3e-21	1929 - 1985	98	56 / 57	plus	ABC01768 ABC01771 ABC01774
MLOC	MLOC_75010.1	3010	3e-21	2936 - 2992	98	56 / 57	plus	ABC01768 ABC01771 ABC01774
JLOC1	JLOC1_50013.3	2084	2e-21	1976 - 2032	98	56 / 57	plus
JLOC1	JLOC1_50013.1	3072	2e-21	2964 - 3020	98	56 / 57	plus
Harvest21	ABC01772	1671	3e-25	1551 - 1610	100	60 / 60	plus
Harvest35	U35_14656	680	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_14656 680 Hv_44K_v2
GCACGAGGGGCATCATGGTGTTCAAGCTGGCGGCGGAGGGCGAGGCCGGCGTGCGGAACG
TGCTGCGCATGATGCGGGAGGAGTTCGAGCTCACCATGGCGCTCGGCGGGTGCACCAAGC
TCAGCGACATCACCCGCGAACACATCTTCACCGAGGGCGACCGCCTCGGACGCCCGCTGC
CGAGGATGTGATCAAGAGCCAACGACACACGACGCGCTCATCGCCGTCTCGACGCACGGC
CGGGCATATGCATGCTAGCCAGTATCCACCGCAACGCAACGCAACGCACGCAATAATTAC
AGCGAACTCTATATCTACGACGCCGTCAGCGCCAAGATGCTAGCCGTGTGTGTCCGGCCG
GGGACGGTGAGCCGTAGTAGATAAATTTTTGCGTACTTGTCGACCGGCACGTCTCGCCAT
TTCCACCATATTTCGCACCGACTACACCATATTGTATTTCCATGTCCTATTGGGTCCGCA
CGTATACACTCATCGATTCTGTATTTATCATACATTGTCATCGAGTAAAGCCTATTTGGA
TACTGGTATTATCTGGATACACGTTGAGCTAATTAAAGTGCAAGCTCTACTGCAAGGTGG
GCGTCTTGTAGATAAAAAAAAAAAAAAAAACAACTCCTAATGTTTTCTGTTTTTTTTTCC
GAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None