barSeed - Barley Seed Development Database

Probe CUST_7347_PI390587928

Source Contig U35_14657

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7347_PI390587928	Hv_44K_v2	GTCCGCACGTATACACTCATCGATTCTGTATTTATCATACATTGTCATCGAGTAAAGCCT	1464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373354	1543	2e-24	1476 - 1535	100	60 / 60	plus	ABC01768 ABC01771 ABC01774
MLOC	MLOC_75010.2	1997	2e-24	1843 - 1902	100	60 / 60	plus	ABC01768 ABC01771 ABC01774
MLOC	MLOC_75010.1	3010	2e-24	2850 - 2909	100	60 / 60	plus	ABC01768 ABC01771 ABC01774
JLOC1	JLOC1_50013.3	2084	8e-25	1890 - 1949	100	60 / 60	plus
JLOC1	JLOC1_50013.1	3072	8e-25	2878 - 2937	100	60 / 60	plus
Harvest21	ABC01772	1671	3e-25	1465 - 1524	100	60 / 60	plus
Harvest21	ABC01771	563	3e-25	26 - 85	100	60 / 60	minus	ABC01771
Harvest35	U35_33301	510	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_14657	1545	3e-25	1465 - 1524	100	60 / 60	plus
Harvest35	U35_14656	680	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (1545 bp)

>U35_14657 1545 Hv_44K_v2
GCACCTCGCCTGGCGCCTGCGTCCTCCTCTAAGAGTGGTGAGGGGCTCGGCGCTGCTAGC
GAGGCAAACATGGGGGAGACGATCACCAATGTATCGGAGTACCAGGCCATCGCGAAGCAG
AAGCTTCCCAAGATGGCCTACGACTACTATGCATCCGGGGCGGAGGATGAGTGGACCCTC
AAGGAGAACAGGGAGGCATTCTCCAGGATCCTGTTTCGTCCTCGCATACTGATCGACGTG
TCGACCATCGACATGACCACATCTGTCCTGGGAATGAAGATATCCATGCCCATCATGATT
TCCCCCACCGCCTTTCAGAAGATGGCTCACCCTGAAGGAGAGTACGCAACAGCACGGGCA
GCGTCAGCAGCAGGAACGGTGATGACGCTGTCATCGTGGGCTACCTCGAGCGTGGAGGAG
GTGGCCTCGACTGGGCCGGGGATCCGCTTCTTCCAGCTCTACGTGTACAAGAACAGGAAG
GTGGTGGCGCAGCTGGTGAAGAGGGCCGAGAAGGCCGGGTTCAAGGCCATAGCGCTCACC
GTCGACACCCCGCGCCTCGGCCGCCGCGAAGCCGACATCAAGAACAGGTTCGTGCTGCCG
CCGGGCCTCACGCTCAAGAACTTCGAGGGCCTCGACCTCGGCACCATGGACCAGGCTAAT
GATTCCGGGCTGGCGTCGTACGTCGCCGGCCAAATCGACCGCACCCTGAGCTGGAAGGAC
GTCAAGTGGCTGCAGAGCATCACCACCATGCCCATCCTCGTAAAGGGAGTCATCACCGCG
GAAGACGCTCGGCTGGCCGTCCACTCCGGCGCGGCAGGCATCATCGTGTCCAACCACGGC
GCCCGCCAGCTCGACTACGTGCCGGCCACGATCAGCGCCCTCGAGGAGGTGGTCACGGCC
GCCCAGGGACGCATCCCGGTGTACCTCGACGGCGGCGTCCGCCGCGGCACCGACGTCTTC
AAGGCGCTCGCCCTCGGCGCCTCCGGCGTCTTCATTGGGCGGCCGGTGGTGTTCGCGCTG
GCGGCGGAGGGCGAGGCCGGCGTGAGGAACGTGCTGCGCATGATGCGGGAGGAGTTCGAG
CTCACCATGGCGCTCGGCGGGTGCACCAAGCTCAGCGACATCACCCGCGAACACATCTTC
ACCGAGGGCGACCGCCTCGGACGCCCGCTGCCGAGGATGTGATCAAGAGCCAACGACACA
CGACGCGCTCATCGCCGTCTCGACGCACGGCCGGGCATATGCATGCTAGCCAGTATCCAC
CGCAACGCAACGCAACGCACGCAATAATTACAGCGAACTCTATATCTACGACGCCGTCAG
CGCCAAGATGCTAGCCGTGTGTGTCCGGCCGGGGACGGTGAGCCGTAGTAGATAAATTTT
TGCGTACTTGTCGACCGGCACGTCTCGCCATTTCCACCATATTTCGCACCGACTACACCA
TATTGTATTTCCATGTCCTATTGGGTCCGCACGTATACACTCATCGATTCTGTATTTATC
ATACATTGTCATCGAGTAAAGCCTAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14657 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g57220.1	370	protein\|hydroxyacid oxidase 1, putative, expressed
Brachypodium v1_2	Bradi1g06430.1	370
Arabidopsis v10	AT3G14420.1	367	Aldolase-type TIM barrel family protein \| chr3:4821804-4823899 FORWARD LENGTH=367