barSeed - Barley Seed Development Database

Probe CUST_7346_PI390587928

Source Contig U35_14658

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7346_PI390587928	Hv_44K_v2	TTTGAAGGTTTGGACCTGGGGAAAATGGACCAGGCTAACGATTCAGGACTAGCTTCATAT	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74253.2	5936	2e-24	2643 - 2702	100	60 / 60	plus	ABC01774 ABC05485 ABC08976 ABC30328 ABC45108
MLOC	MLOC_74253.1	3639	2e-24	3272 - 3331	100	60 / 60	plus	ABC01774 ABC05485 ABC08976
JLOC1	JLOC1_49475.2	5962	8e-25	2652 - 2711	100	60 / 60	plus
JLOC1	JLOC1_49475.1	4936	8e-25	2652 - 2711	100	60 / 60	plus
Harvest21	ABC01774	1616	3e-25	813 - 872	100	60 / 60	plus	ABC01774
Harvest21	ABC01773	711	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_14659	1612	3e-25	813 - 872	100	60 / 60	plus
Harvest35	U35_14658	711	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_14658 711 Hv_44K_v2
GGACACTGTCTACTGTGTTATTAGCCCATATTCTTTCTTTGTCTTGATCGTGTAATCTTC
TTCACAAGGTGGTGATTTGCGCAGAAAAATGGAGATCACCAATGTCACAGAGTACCAGGC
CATCGCCAAGCAGAAGCTTCCCAAGATGATCTACGACTACTACGCCTCCGGTGCCGAGGA
CGAGTGGACGCTCCAGGAGAACAGGGAGGCCTTTGCCAGGATCCTGTTCCGCCCGCGCAT
TCTGATCGATGTATCCAAAATCGACATGACAACAACTATCCTGGGATTCAAGCTCTCAAT
GCCCATCATGATTTCCCCCACTGCCATGCAGAAGATGGCTCACCCAGATGGAGAGTATGC
AACTGCCCGCGCAGCATCAGCAGCAGGCACTATAATGACATTGTCGTCCTGGGCTACTTC
AAGTGTTGAGGAGGTTGCCTCAACCGGACCAGGGATCCGTTTCTTCCAACTCTATGTCTA
CAAAGACAGGAGGGTGGTCGAGCAGCTAGTGAGGAGAGCGGAAAAGGCTGGATTCAAGGC
GATAGCGCTCACCGTGGACACCCCACGACTTGGCCGCAGGGAAGCTGATATCAAGAACAG
ATTTGTTTTGCCACAAAATTTGACACTGAAGAACTTTGAAGGTTTGGACCTGGGGAAAAT
GGACCAGGCTAACGATTCAGGACTAGCTTCATATGTCGCGGGTCAAATCGA

Homology of Contig U35_14658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g05820.2	370	7e-127	protein\|hydroxyacid oxidase 1, putative, expressed
Brachypodium v1_2	Bradi1g58480.1	372	6e-128
Arabidopsis v10	AT3G14420.1	367	7e-127	Aldolase-type TIM barrel family protein \| chr3:4821804-4823899 FORWARD LENGTH=367