barSeed - Barley Seed Development Database

Probe CUST_7343_PI390587928

Source Contig U35_14659

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7343_PI390587928	Hv_44K_v2	GTGTGTGTGTGTTTCAACATCAAAGTGGTGTGATATGGTCTGGATCGATCAAACATAATT	1489	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249367.1	1340	2e-24	1243 - 1302	100	60 / 60	plus	ABC01774 ABC08976
MLOC	MLOC_16035.1	679	2e-24	35 - 94	100	60 / 60	minus	ABC01774
JLOC1	JLOC1_11027.1	985	8e-25	709 - 768	100	60 / 60	plus
Harvest21	ABC01774	1616	3e-25	1490 - 1549	100	60 / 60	plus	ABC01774
Harvest35	U35_14659	1612	3e-25	1490 - 1549	100	60 / 60	plus
Harvest35	U35_14655	812	3e-25	724 - 783	100	60 / 60	plus

Contig Sequence (1612 bp)

>U35_14659 1612 Hv_44K_v2
GTGCAAATGGATGAGGAAGCAGTGTAGGAGAGCCACCCTCTCTTCCCACCTCCAATTGCT
CATCTCATCCATACAACCCCTCATCTCTCTCTCTCTCTCTCTCAACTGCGCAATTTTGTC
TGCATGCACCCAAACCTCCTGCGCCTCATCTCTTATATTGCATCAATCCCCTTCCCCACC
ACAACCCCTAGTTCCTTCCTTCCCCTCAATCTTCAGGGGACAGTCAGCCAAGCCTCCTCG
TACAAGGTGGTGATTTGCGCAGAAAAATGGAGATCACCAATGTCACAGAGTACCAGGCCA
TCGCCAAGCAGAAGCTTCCCAAGATGATCTACGACTACTACGCCTCCGGTGCCGAGGACG
AGTGGACGCTCCAGGAGAACAGGGAGGCCTTTGCCAGGATCCTGTTCCGCCCGCGCATTC
TGATCGATGTATCCAAAATCGACATGACAACAACTATCCTGGGATTCAAGCTCTCAATGC
CCATCATGATTTCCCCCACTGCCATGCAGAAGATGGCTCACCCAGATGGAGAGTATGCAA
CTGCCCGCGCAGCATCAGCAGCAGGCACTATAATGACATTGTCGTCCTGGGCTACTTCAA
GTGTTGAGGAGGTTGCCTCAACCGGACCAGGGATCCGTTTCTTCCAACTCTATGTCTACA
AAGACAGGAGGGTGGTCGAGCAGCTAGTGAGGAGAGCGGAAAAGGCTGGATTCAAGGCGA
TAGCGCTCACCGTGGACACCCCACGACTTGGCCGCAGGGAAGCTGATATCAAGAACAGAT
TTGTTTTGCCACAAAATTTGACACTGAAGAACTTTGAAGGTTTGGACCTGGGGAAAATGG
ACCAGGCTAACGATTCAGGACTAGCTTCATATGTCGCGGGTCAAATCGACCGCACCCTGA
GCTGGAAGGATGTGAAGTGGCTCCAGAGTATCACCACGATGCCGATCCTGGTGAAGGGAG
TGATCACCGCAGAGGACAGCAGGCTCGCCGTGGAGAACGGCGCGGCCGGAATCATCGTGT
CCAACCACGGCGCCCGGCAGCTGGACTACGTCCCGGCGACCATCAGCGCCCTGGAGGAGG
TCGTGAAGGCTGCTCGCGGGCAGATCCCCGTCTTCCTGGACGGCGGTGTCCGCCGCGGCA
CGGACGTCTTCAAGGCGCTCGCTCTCGGCGCCGCCGGCGTCTTCATCGGAAGGCCGGTGG
TGTTCTCGCTGGCGGTGGCCGGGGAGGCCGGGGTGAGCAACGTGCTCAAGATGCTGCGCG
ACGAGTTCGAGCTGACCATGGCGCTCAGCGGCTGCAACTCGCTAGCAGACATCACCCGCA
ACCACGTCGTCACCGAGGCCGACAAATTCGGCGTCATGCCGTCCCGCTTGTAACTTGGAA
CCAAATCGAGTCGGCACCTACGTCCTCGCCGCCGTTATTGATCCAAGACTTACATACGTA
AGGGCATCCATGCATGATATGCTAGTGTAATTAATTTTGGACGGGATGTGTGTGTGTGTG
TTTCAACATCAAAGTGGTGTGATATGGTCTGGATCGATCAAACATAATTAAATATTATTA
TTCCTTGCAAAAAAAAAAAAAAAAAGCATTTTCNCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g05820.2	370	protein\|hydroxyacid oxidase 1, putative, expressed
Brachypodium v1_2	Bradi1g58480.1	372
Arabidopsis v10	AT3G14420.1	367	Aldolase-type TIM barrel family protein \| chr3:4821804-4823899 FORWARD LENGTH=367