barSeed - Barley Seed Development Database

Probe CUST_7327_PI390587928

Source Contig U35_26638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7327_PI390587928	Hv_44K_v2	ATAAATGGAAGACCAATGCTTCTGGCAACAACAAAGGCTGGAAATCAGATGGATGGGAGG	313	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58183.3	1817	2e-24	948 - 1007	100	60 / 60	plus	ABC11869
MLOC	MLOC_58183.1	1293	2e-24	1051 - 1110	100	60 / 60	plus	None
MLOC	MLOC_58183.2	2352	2e-24	1051 - 1110	100	60 / 60	plus	ABC11869
JLOC1	JLOC1_37778.1	2890	8e-25	1430 - 1489	100	60 / 60	plus
Harvest21	ABC25941	620	3e-25	314 - 373	100	60 / 60	plus
Harvest35	U35_26638	620	3e-25	314 - 373	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_26638 620 Hv_44K_v2
GTGGCAGCTAAAGCTTCTATCGCAGAGCCTATGGACGCAGGGAATGATTCCTGGGGGAGT
GTGGCAGCAAAGGCTCAGACTTCTACTGCACAGCAGGAGTCCTGGGGTAATGTTTCTGCT
TCACCATCAGATAATGCGTGGGGTGCTGCTCCAGTTTCCCAGGGACCCGATAATTCAGAT
GCAAAGCAGCCAGATTCTTGGGATGGCTGGGGTTCTGCTCCTCCAGTTTCCCAGGGACCA
GATAATTCAGATGCAAAGCAGCCAGATTCTTGGGATGGCTGGGGTTCTGCTCAAGCCAAT
GAGTCGAGTACTGATAAATGGAAGACCAATGCTTCTGGCAACAACAAAGGCTGGAAATCA
GATGGATGGGAGGCCAAAGAAAACCGGATGGACCAAAGAGACAAGGCAAGCAGGCCCCCA
ATGAGACCTCCTGTTGAGAGGCCACCAAGACCACGGTATGAACTGCCAGCTGAGGCGAAA
AAGGTTCTACAAGAAATNCAACCCATTGNAACAACGGTCAGAAAGATCTTCCGTGAATCA
AGTGATGGCATAAGGCTTCCCCTGGAGGACGAAAAGTTNATCATANAAAAAGTTCTGGAG
CACCACCCTGAAAAGGAAAA

Homology of Contig U35_26638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g45065.1	1955	3e-61
Arabidopsis v10	None