- Probe CUST_7321_PI390587928
- Source Contig U35_38615
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7321_PI390587928 | Hv_44K_v2 | AAATTGTGCCGGTGCATGAATAAATAAGGCAATAAAAAAGGGGGCGTGCACGACGGGTTT | 124 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.715 | 4.797 | 1.239 | 0.624 | 0.402 | 0.753 |
| Raw | 547.472 | 614.379 | 140.824 | 119.050 | 24.823 | 52.193 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_38615 | 203 | 3e-25 | 125 - 184 | 100 | 60 / 60 | minus |
Contig Sequence (203 bp)
>U35_38615 203 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAACATCACACCATCGATTTCTTTTTTGGGCAAAACAAGGGT TTTTTTCTGCACACAAAGATTCTTTGACCGGTACCCAGTTGACTTGACCTTCCGCTTGCC GATCAAACCCGTCGTGCACGCCCCCTTTTTTATTGCCTTATTTATTCATGCACCGGCACA ATTTTTTGTCACACACACACACA
Homology of Contig U35_38615 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |