barSeed - Barley Seed Development Database

Probe CUST_731_PI390587928

Source Contig U35_45722

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_731_PI390587928	Hv_44K_v2	GTTGCAAGACCAAACAATTATGTAACTTATCCTTTTGCAATCTCAGTATTTGGGGAAAAG	32	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76498.5	2023	3e-22	522 - 580	98	58 / 59	minus	ABC06613
MLOC	MLOC_76498.4	1045	3e-22	505 - 563	98	58 / 59	minus	ABC06613
MLOC	MLOC_76498.3	1136	3e-22	311 - 369	98	58 / 59	minus	ABC06613
MLOC	MLOC_76498.1	2357	3e-22	861 - 919	98	58 / 59	minus	ABC06613
JLOC1	JLOC1_51010.1	1278	1e-22	1045 - 1103	98	58 / 59	plus
Harvest21	ABC44918	593	3e-25	33 - 92	100	60 / 60	minus
Harvest21	ABC06612	997	1e-23	915 - 975	98	60 / 61	plus
Harvest35	U35_45722	593	3e-25	33 - 92	100	60 / 60	minus
Harvest35	U35_2388	1010	5e-23	923 - 982	98	59 / 60	plus

Contig Sequence (593 bp)

>U35_45722 593 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTAAAAAAATGATACCTTTTCCCCAAATACTGAGATTGCAAAA
GGATAAGTTACATAATTGTTTGGTCTTGCAACATTCACTGGCACAACCGTACATACATAA
CATCTCAACTATTTTTAAGGAACATCAGGAACTACGGGTTTAATACACACACAGTATTTG
TTCATATTGGCAAGCGCCGAAAGTTCCCCTGTGTAATCTCTGCCACTTCAATTAATAGCG
TCATGCATGTCACTGCAGCTCATATGAAGAAAAGGTGAACCCAGATTGTTTCTCGTTGGT
GCACTTCAATTCAAGCTTCTGAAATGGACTGCTGTTTGGGTCGTAATAAAAGCCACTAAT
GGATCCATCGCTACAAGAAAAGCAGACGTAATAGAAACCAGCTATGGTCAACCCACAGTC
CACTCCCACATTGACAAAGTACTGCTCTTTCCATCTCATAAATATAAAAGGATAGTTGCT
AAAGTCCACAGACTTGCCACCATCTGCCTCAATCTGACTCAGAAGAGGGGTAAATGATGA
GAACTTGGACCAGTGTCTTACATCATCCTCTGCTGATGCCTCCCACTTGCCAG

Homology of Contig U35_45722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05090.1	219	2e-75	protein\|expressed protein
Brachypodium v1_2	Bradi2g02940.1	219	4e-77
Arabidopsis v10	AT2G37680.1	215	3e-67	CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). \| chr2:15803500-15805515 REVERSE LENGTH=215