barSeed - Barley Seed Development Database

Probe CUST_7319_PI390587928

Source Contig U35_38617

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7319_PI390587928	Hv_44K_v2	ACTAGTCGGTGATCTTGCGGAAGCAAGACGAGAAATAATCACTGCAAATTTTCTGCCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75846.5	3497	2e-23	3300 - 3357	100	58 / 58	plus	ABC00002 ABC00268 ABC00680 ABC37456
JLOC1	JLOC1_50591.1	3489	1e-23	3223 - 3280	100	58 / 58	plus
Harvest21	ABC00680	3411	3e-25	3264 - 3323	100	60 / 60	plus	ABC00680
Harvest35	U35_38617	474	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_14211	3451	3e-25	3305 - 3364	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_38617 474 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGCAGAAAATTTGCAGTGATTATTTCTCGTCTTGCTTCCGCAA
GATCACCGACTAGTTAGGGGAAAGGGTAAAACGATTACACCACGCCGTGCTCCAAACACG
GTATAACTCCACTAGAACATTAAAACCTCTCTAGAAGACGGGACAACCGAAACCATATAT
TTGGTAGCACTTTACAACTAGGGGCTGGTCAGATCAGCCATGTTTCTTTCATTCATGCAC
CGGAAAAATCTTAAAGCGGAGCTCCATTCCAATCTCGCTCCAATACGGATGTCATGTTGT
TTGGTCCAATGCCCAAATTCCTCACACGGTGTAGTTTTGGTTGATGGTGTCGATGTCAAG
GCCCTTGAGCTTCCAGCTGTCGGGTAAGGGAGATGGCTTAACTCTGTCCTTGGATATTGT
CATGATAGTGCCATCATTGAGAATGGCAATGATAAGGACCATGAAGGGAGCGAA

Homology of Contig U35_38617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None