barSeed - Barley Seed Development Database

Probe CUST_7316_PI390587928

Source Contig U35_14660

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7316_PI390587928	Hv_44K_v2	GACTACACCATATTGTATTTCCATGTCCTATTGGGTCCGCACGGTATACACTCATCGATT	303	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373354	1543	3e-22	1442 - 1500	98	59 / 60	plus	ABC01768 ABC01771 ABC01774
MLOC	MLOC_75010.2	1997	3e-22	1809 - 1867	98	59 / 60	plus	ABC01768 ABC01771 ABC01774
MLOC	MLOC_75010.1	3010	3e-22	2816 - 2874	98	59 / 60	plus	ABC01768 ABC01771 ABC01774
JLOC1	JLOC1_50013.3	2084	1e-22	1856 - 1914	98	59 / 60	plus
JLOC1	JLOC1_50013.1	3072	1e-22	2844 - 2902	98	59 / 60	plus
Harvest21	ABC01775	577	3e-25	1 - 60	100	60 / 60	minus
Harvest21	ABC01772	1671	5e-23	1431 - 1489	98	59 / 60	plus
Harvest21	ABC01771	563	5e-23	61 - 119	98	59 / 60	minus	ABC01771
Harvest35	U35_14660	363	3e-25	304 - 363	100	60 / 60	plus
Harvest35	U35_14657	1545	5e-23	1431 - 1489	98	59 / 60	plus
Harvest35	U35_14656	680	5e-23	440 - 498	98	59 / 60	plus

Contig Sequence (363 bp)

>U35_14660 363 Hv_44K_v2
GCGCATGATGCGGGAGGAGTTCGAGCTCACCATGGCGCTCGGCGGGTGCACCAAGCTCAG
CGACATCACCCGCGAACACATCTTCACCGAGGGCGACCGCCTCGGACGCCCGCTGCCGAG
GATGTGATCAAGAGCCAACGCAACGCAACGCACGCAATAATTACAGCGAACTCTATATCT
ACGACGCCGTCAGCGCCAAGATGCTAGCCGTGTGTGTCCGGCCGGGGACGGTGAGCCGTA
GTAGATAAATTTTTGCGTACTTGTCGACCGGCACGTCTCGCCATTTCCACCATATTTCGC
ACCGACTACACCATATTGTATTTCCATGTCCTATTGGGTCCGCACGGTATACACTCATCG
ATT

Homology of Contig U35_14660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None