barSeed - Barley Seed Development Database

Probe CUST_7315_PI390587928

Source Contig U35_14661

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7315_PI390587928	Hv_44K_v2	TTAGTGCCAAATTCTAGTGTCTAGCGTTTTCGAATTTTATTATAGGGGCCACAAGTTTTT	972	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.202	1.499	1.212	0.878	0.374	0.385
Raw	1725.930	1893.647	1319.228	1499.293	225.148	251.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56471.3	6275	2e-24	6027 - 6086	100	60 / 60	plus	ABC01811
MLOC	MLOC_56470.1	1646	2e-24	1033 - 1092	100	60 / 60	plus	ABC01810 ABC01811
JLOC1	JLOC1_36526.1	1459	8e-25	1026 - 1085	100	60 / 60	plus
Harvest21	ABC01811	1080	3e-25	978 - 1037	100	60 / 60	plus	ABC01811
Harvest35	U35_14661	1075	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1075 bp)

>U35_14661 1075 Hv_44K_v2
GATCCCTTCACCCCCACCGGCGGCGCGCAGCTCGACGACCCGAGCGATCCTGCGGCGGAG
GCGGCAGCCATGGTGCACGTCAACTTCTACCGCAACTATGGTAAGACCTTCAAGAAGCCA
AGGCGTCCGTATGAGAAGGAGCGTCTTGACGCTGAGCTGAAGCTGGTTGGGGAGTACGGT
CTGCGGGCCAAGCGTGAGCTCTGGCGCGTGCAGTATGCTCTGAGCCGCATCCGGAATGCT
GCCAGGGAGCTGCTCACCCTGGATGAGAAGAGCCCCCGCCGCATCTTTGAGGGTGCAGCG
CTGCTCCGCCGCATGAACCGCTATGGTCTTCTCAGTGAGGACCAAAACAAGCTTGATTAC
GTGCTTGCCCTCACTGTTGAGAACTTCCTCCAGCGCCGTCTCCAGACCATCGTGTTCAAG
AATGGCATGGCCAAGTCAATCCACCATGCTCGTGTCCTTATCCGGCAGCGCCACATCAGG
GTTGGAAAGCAGCTCGTCAACATTCCTTCTTTCATGGTGAGGGTTGACACAGAGAAGCAC
GTCGACTTCTCACTCACCAGCCCCCTGGGTGGTGGCCCTGCTGGAAGAGTGAAGCGGAAG
AACCAGAAGAAGGCCTCAGGAGGTGGTGGTGACGAGGGCGAGGAGGAGGAAGACTAAATG
CTTGGCCTCGCCCCTCGTAACTTTTGCTGCAGAAATGATTCGAACTTTGGCTCGAGCTTA
GAAACTAAGTGGTGCAGAGCTTTCGTTTCTTTTACTCAGAATCTTGCTTTTGCTGTCAGT
TCTAGAACTAAACTTGTGGGTGTCGGTTTTGCTTTGTTAGTAACTACCGGCTGAACTCAG
TGCCGCTGCTTCATTTTTGGTGACCTAAACGTATCTTTCTGCACGTGGTGTCACTGTTGT
TTTTGCTATGTTTATCCTTTTGCCTACAATACCAAATTCTATTAGTTTTGCTTAAAAAAA
AAAAAAAAAGAATTAGTGCCAAATTCTAGTGTCTAGCGTTTTCGAATTTTATTATAGGGG
CCACAAGTTTTTATATAGAAGAAAATATCGTTGTCTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g38959.1	196	3e-113	protein\|40S ribosomal protein S9-2, putative, expressed
Brachypodium v1_2	Bradi1g20580.1	196	5e-122
Arabidopsis v10	AT5G39850.1	197	2e-110	Ribosomal protein S4 \| chr5:15950053-15951171 FORWARD LENGTH=197