barSeed - Barley Seed Development Database

Probe CUST_7313_PI390587928

Source Contig U35_14663

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7313_PI390587928	Hv_44K_v2	CCACAACATGTGACAAATCAATGAGGTCATGTAATCATCTATGAATAAAATTCCCCTTGT	503	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.011	0.537	1.491	2.266	3.506
Raw	52.869	180.506	13904.903	52230.000	30271.600	52519.100

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81761.1	1377	2e-24	732 - 791	100	60 / 60	plus	ABC00216 ABC00231 ABC26710 ABC32010 ABC32343 ABC32779 ABC32916 ABC33104
JLOC1	JLOC1_54387.1	1373	8e-25	732 - 791	100	60 / 60	plus
Harvest21	ABC00771	609	3e-25	497 - 556	100	60 / 60	plus
Harvest21	ABC00231	597	3e-25	504 - 563	100	60 / 60	plus	ABC00231
Harvest21	ABC32343	413	1e-23	316 - 375	98	59 / 60	plus	ABC32343
Harvest21	ABC32916	290	6e-22	21 - 77	98	56 / 57	minus	ABC32916
Harvest35	U35_14663	618	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_14663 618 Hv_44K_v2
GGCAAAACAACGTTGAAAGCATGAAGACCTTATTCCTCCTAGCTATCCTTGCTCTTGTAG
CAAGCACAACCTTCGCGCAATACTCAGTTGGCGGTGGTTACAATGACGTTGGCGGAGGAG
GCGGTTCTCAACAATGCCCACAGGAGCGGCCGAACCTAGGCTCTTGCAAGGATTACGTGA
TGGAGCGGTGTTTCACGATGAAGGATTTTCCACTTACCTGGCCCACAAAATGGTGGAAGG
GAGGCTGTGAACAAGAGGTTCGGGAGAAGTGTTGCCAGCAACTGAGCCAGATAGCACCAC
AATGTCGCTGTGATGCTATCCGGGGAGTGATCCAAGGCAAGCTCGGTGGTATCTTTGGCA
TTGGGGGAGGTGATGTATTCAAACAAATTCAGAGGGCCCAAATCCTCCCCTCAAAGTGCA
ACATGGGCGCCGACTGTAAGTTCCCTAGCGGCTATTACTGGTGATGATATAGCCTCTATT
TGTGACCAAAAAACTGTCACATACCACAACATGTGACAAATCAATGAGGTCATGTAATCA
TCTATGAATAAAATTCCCCTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAATTGAAAATA
CCTGTGTATGAGTTTGTT

Homology of Contig U35_14663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None