barSeed - Barley Seed Development Database

Probe CUST_7312_PI390587928

Source Contig U35_14664

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7312_PI390587928	Hv_44K_v2	ACCACAACATGTGACAAATAAATGTGCTCATGTAACCATCTATGAATAAAATTCCGCTTG	529	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.451	1.960	2.483	5.335
Raw	17.259	53.799	5712.560	35767.600	16603.267	39255.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50165.1	757	2e-24	98 - 157	100	60 / 60	minus	ABC00216 ABC00231 ABC26710 ABC32343 ABC32779 ABC32916
JLOC1	JLOC1_32039.1	767	8e-25	108 - 167	100	60 / 60	minus
Harvest21	ABC52873	574	3e-25	512 - 571	100	60 / 60	plus
Harvest21	ABC32779	284	3e-25	189 - 248	100	60 / 60	plus	ABC32779
Harvest21	ABC00216	609	3e-25	508 - 567	100	60 / 60	plus	ABC00216
Harvest35	U35_50624	574	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_14664	625	3e-25	530 - 589	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_14664 625 Hv_44K_v2
GTGGATCCCCCGGGCTGTAGGGGTCGGCACGAGTAAACATTGAAAGCATGAAGACCTTAT
TCCTCCTAGCTCTCCTTGCTCTTGTAGCAAGCACAACCTCCGCGCAATACTCAGTTGGTG
GTGGTTACAATGACGTTGGTGGAGGAGGTGGTTCTCAACAATGCCCACAAGAGCGGCCAA
ACCTAGGTTCTTGCAAGGATTACGTGATGGAGCGGTGTTTCACGATGAAGGATTTTCCAG
TTACCTGGCCCACGAAGTGGTGGAAGGGAGGCTGTGAGCATGAGGTTCGGGAGAAGTGTT
GCCAGCAGCTGAGCCAGATAGCACCACATTGTCGCTGCGATGCTATCCGGGGAGTGATCC
AAGGCAAGCTCGGTGGTATCTTTGGCATTGGGGGAGGTGCTGTATTCAAACAAATTCAGA
GGGCCCAGATCCTCCCCTCAAAGTGCAACATGGGCGTCGACTGTAGGTTCCCTAGTGGCT
ATTACTGGTGATGATATAGCCCCTATTTGTGACCAATAAACTGTCACATACCACAACATG
TGACAAATAAATGTGCTCATGTAACCATCTATGAATAAAATTCCGCTTGTATAAAAAAAA
AAAAAAAAAATAAATGTGTAGGAAA

Homology of Contig U35_14664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None