barSeed - Barley Seed Development Database

Probe CUST_7290_PI390587928

Source Contig U35_38620

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7290_PI390587928	Hv_44K_v2	CATATGAATGTACTGGATGATAAATTGAGTATGGATGAGACGGTTGCAATTTTTGGCGAT	24	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.690	1.464	1.264	0.904	0.447	0.369
Raw	6040.877	8255.623	6266.510	6834.213	1230.214	1090.147

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6378.3	1251	2e-24	367 - 426	100	60 / 60	minus	ABC10248
MLOC	MLOC_6378.2	1020	2e-24	414 - 473	100	60 / 60	minus	ABC10248
Harvest35	U35_38620	437	3e-25	25 - 84	100	60 / 60	minus

Contig Sequence (437 bp)

>U35_38620 437 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTTTTTATCGCCAAAAATTGCAACCGTCTCATCCATACTCAA
TTTATCATCCAGTACATTCATATGCCATATGCAGGAATTCTCCAACAAGATAGTAAGACA
TTGGGTCCCTAAATCCACGCATATGGTCCAATCAGTTAACACAAGAACAACCAGGCCTCG
ACCCTCACCTCACATGAGCTCCTCCTCCTTGTGGAGGCAGTAGCGGCCGGACTCCGGGTC
GGGGCCCTCCACGGAGGGCCGATCCAGGAGGTGCTTCAGGTTGGGGCCGGTGAACTTGAA
GAGCTTCTCGAAGACCATCGTGGTCTCCTTCTCGTCGAGCGGACGCATGGCGCAGGGGAG
GCGGCTGCTGCGGCGGCGGCGGCGGCGGGGTTTGGGGGCGGAGTGGCGGTGAAGGTTGGG
GACGGACGGACGCGTGG

Homology of Contig U35_38620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None