barSeed - Barley Seed Development Database

Probe CUST_7287_PI390587928

Source Contig U35_38623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7287_PI390587928	Hv_44K_v2	TGCGGACCATTTTAGTATTTCTATATCAGCACTAAAGCGTAATCTCATGAGTTCTTGACT	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359461	755	2e-24	590 - 649	100	60 / 60	plus	ABC02448 ABC02449 ABC02450 ABC02452
JLOC1	JLOC1_16042.1	906	8e-25	518 - 577	100	60 / 60	plus
Harvest21	ABC31191	563	3e-25	447 - 506	100	60 / 60	plus
Harvest35	U35_38623	538	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_36566	562	3e-25	66 - 125	100	60 / 60	minus
Harvest35	U35_15038	701	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_38623 538 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAACAGTCAAGAACTCATGAGATTACGCTTTAGTGCTGATA
TAGAAATACTAAAATGGTCCGCACATTTGACAAACAAGTCTAGCCAAAACTTCCACAGGT
TCTCCGAATACATGAACAGTTTCAGTCACCAACATAGATTCGATTCACCATAAAATGACA
TTTCTCAGCTCATGACAATCGCAAGAAACAAGCATTACTGGCCCTAGCTCGAATTAACCT
TAGATGCTGCTCGGGTACATGAACACCCTGACCTTGTACACGTACGCCAGGCGCTTGCCG
CCGTACCACGCCACGTCCTCCTTGGTGTTCACCCCCTCGATCTGCACCAGCGACGTGTTC
TCGTACTGGTTCGACTTGGACCTCTTGAAGCCGAGGATGGTGCCCCTGACGTANAGCCTG
ACTCGCTGCCCCGTGCGTCCCTTCACCATTGCTGCCGCCGCTGCTGCTTCTTCCTACCGC
CGCCGGAAACAAGGGGCTCGGGGGTTGGGGTGGGGGCTTCGTGTGGGCGGACGCGTGG

Homology of Contig U35_38623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None