barSeed - Barley Seed Development Database

Probe CUST_7283_PI390587928

Source Contig U35_38628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7283_PI390587928	Hv_44K_v2	AACTCTTGTTTGACTGTTGGTACTGATCTGGCTGCAATAGGAAGCACCTTTTTACTCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17932.1	2594	2e-23	10 - 67	100	58 / 58	minus	ABC04174 ABC04175
JLOC1	JLOC1_12391.1	2648	1e-23	2525 - 2582	100	58 / 58	plus
Harvest21	ABC04175	2518	1e-23	2446 - 2505	98	59 / 60	plus	ABC04175
Harvest35	U35_38628	681	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_1842	2519	3e-25	2446 - 2505	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_38628 681 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGTAAAAAGGTGCTTCCTATTGCAGCCAGATCAGTACCAACA
GTCAAACAAGAGTTTACACAATCTTTGCAACTAAAATTGTCAACGATACAAATGCATACA
AACCCCTACCAAAAACTCCAAGCGCTTGTACAATTTACCAAAGGTGCTGCCTACTTATTC
TGAAACAACAGCTGTGTCCTTTTCTCGTCACGAAAAATAATCACAAGAGCGAAATATATT
AACAATAAAGTTTGTATTGCCCGCTGACGGCAAGAGTGTTGCTGCTAACAGGATGGCATA
TGTAGAGCACGGCTGGCTCGCCATTTTGTTCCAATGGTTAAGAGGGCGACCAGGGCGACC
GGGGACTTGCACAGCAGCCGAATCTGCAGCGGTTTACACAAAAACAAAAATTTCTGGAAC
ATCCACGGTACATCATCACGAGCTCTGTGTTTGGCGGTGAATCTGGAGTATCCAATCCAT
GTAACTGCTGGTTCCAGCCATCTGGTCCTCGACGAGGTTGGACAGAGATGGATAAATAAA
ATTGAGCAGCCTTCTTGCAGGCAGTATCATCATACTGAAACCAGCAGCACATCGTTCATC
AAGAGAGACATCAGCATAACCACCACGCAGAGCAAGGGATTTGCATAGGGCGAGGATGTA
TAGTGGCAAATATCTTAATGA

Homology of Contig U35_38628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None