barSeed - Barley Seed Development Database

Probe CUST_7282_PI390587928

Source Contig U35_38629

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7282_PI390587928	Hv_44K_v2	ATCATGTTTAGTAATTGAATTTGATTAGCCCCGACGGTGGTCGAGTATCTCCCCGTGGTA	36	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.575	1.328	0.895	0.294	0.269
Raw	3133.867	4751.807	3528.057	3739.560	432.771	432.129

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_38629	693	3e-25	37 - 96	100	60 / 60	minus

Contig Sequence (693 bp)

>U35_38629 693 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCGCGACCGGTGATCCGTACCACGGGGAGATACTCGACCAC
CGTCGGGGCTAATCAAATTCAATTACTAAACATGATTCCATAACCAAGACAGGACGGCAA
ATAACACTGTAACGAAGCAGGACAGAACAAATTAAGCGAGATACTTGTTCCACGAAGTAC
TAATGATGCAGTTCAACAGCGACATAGAAAGCACCGATGGCTTACAACCTCACCCAGCAC
ATAAGTTCCCAAAACAGGACGGCAAAGCAATATGTAGTTAAAGATAGGCGGCAGAGGAGA
CGGATCCTCCGTCGAGCGGACGAGCAGATCAGTAGTCGTCGTCCTCCTCGCCATCCTCGT
CGTCGCCACCCTCTGCGCCGACCTCCTCGTAGTCCTTCTCCAGGGCGGCCAGGTCCTCAC
GGGCCTCCGAGAACTCGCCCTCCTCCATGCCCTCGCCCACGTACCAGTGGACGAAGGCGC
GCTTGGCGTACATGAGGTCGAACTTGTGGTCAATGCGGGAGAAGACCTCGACAACGCTGG
TGGAGTTGGAGATCATGCAGACGGNCCTCTGCACCTTGGCCAGGTCGCCGCCGGGCACCA
CAGTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACT
GGATGGTGCGCTTGGTCTTGATGGTGGCAACGG

Homology of Contig U35_38629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51600.1	452	3e-62	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g07160.1	452	2e-64
Arabidopsis v10	AT4G14960.2	450	2e-63	\| Symbols: TUA6 \| Tubulin/FtsZ family protein \| chr4:8548769-8550319 REVERSE LENGTH=450