barSeed - Barley Seed Development Database

Probe CUST_7281_PI390587928

Source Contig U35_14670

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7281_PI390587928	Hv_44K_v2	GATGACTTAGGTTCTGTGTCAATGTGCTCTTACTCTTAGAGTCATGAACTCAACAGAAAC	1001	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.046	1.748	1.082	0.719	0.280	0.271
Raw	7518.580	10129.050	5388.127	5764.707	773.809	825.728

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_1202.1	838	8e-25	631 - 690	100	60 / 60	plus
Harvest21	ABC07954	1123	3e-25	1003 - 1062	100	60 / 60	plus	ABC07954
Harvest35	U35_14670	1116	3e-25	1002 - 1061	100	60 / 60	plus

Contig Sequence (1116 bp)

>U35_14670 1116 Hv_44K_v2
GGTCTGCAGGGAAGAGTCAAAATTGGAGCGCCCCCATACCCCACCCCCCCTACGATCCCC
GACGCGCACAGAAAATTCTGGTGGCAATCCTCTCCTCCTCCCACCCCGGGGAAGAAGAAG
CCTCTCGATCCCCCGAGAAGGGGCGCTCTTCCCCGCGGATCTCCTCCCTCCGAGAGATCT
GTACCGAGCGAGCGGGCGAGGGCTCGATCCGCCGATGGAGGAGGCGGCGGCGACGGAGAC
CGTGACGGAGACGGGTACGCCGGAGAAGTCGTCCTACAGGTACTGGGTGCGGCAGGCCAC
GGGCGAGGCGGCGCCCCTCCCCGTGCCCCGCAAGCTCGACCCCGCCGCCGCAAACGGCGT
TGGCGGCGGCAACCCCAACGCGCCGCCGTCCCTCGGCTCCGTCTGGAATCAGGCTGGAAC
ATGGGAGGAAAAGAACCTCAATTCATGGGCTAATGGTAGGATAAAGGATTTGTTGGGTTC
TTTAGGTTCACTGGATTTCTCCACAGGGAAGGCATCCATTGATGAAGTCACCAAATGCTC
CGGCGATGCATTTCTAGTAACGGTCCGTAATAAGAAGAGAGTAGGTTATAATTATGAACT
GAGCTTGAGATTTAAAGGTGAATGGTTAATCAAGGAAGAGAAAAAGAAAGTCACTGGCCA
TATAGACATCCCTGAGTTTTCCTTGGGTGAGCTTGATGACCTAGAGGCAGAAGTGAGGTT
CACCGATACCCTTGAATGGGACGACAAGTCGCGGATCAGCAAGGATGTGAAATCATTCCT
TTCTCCCATCAGGGAGAAGCTGGGTACCTTCGAGCAAGAGCTGAAAGATAGGTAGGGAAA
TGCCGGCAGGCGCCACGCGCTGTTTTCAGTATTTGTTACCCATTCTTGTAGCTCGGACTA
TCTTTGTTGTGTTGGATTAAGCGTTGCTGTCTAGACTCGAGGTCATGTTATTCTTGTTTC
TCCAGTCAGTGTAAGGTTACATGGTTTGCCACATGTCGGTTGATGACTTAGGTTCTGTGT
CAATGTGCTCTTACTCTTAGAGTCATGAACTCAACAGAAACATTTGATGATGATGATGAT
TACGATATCTCACTAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04650.1	203	3e-85	protein\|activator of 90 kDa heat shock protein ATPase homolog, putative, expressed
Brachypodium v1_2	Bradi3g03532.1	199	2e-94
Arabidopsis v10	AT5G58110.1	196	8e-65	chaperone binding;ATPase activators \| chr5:23515275-23516479 FORWARD LENGTH=196