barSeed - Barley Seed Development Database

Probe CUST_7255_PI390587928

Source Contig U35_2310

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7255_PI390587928	Hv_44K_v2	AAATTGACCAGATCACAGTTGAGGAGCTGGATATCTTGGACAAACTTCCCCATTACTGCC	867	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.598	0.707	1.261	1.764	0.925	1.086
Raw	350.326	624.825	1010.828	2284.929	412.614	532.163

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250273.1	1632	2e-24	830 - 889	100	60 / 60	plus	ABC05976 ABC05977
MLOC	MLOC_35022.1	1151	2e-24	526 - 585	100	60 / 60	plus	ABC05976 ABC05977
MLOC	MLOC_35022.2	1007	2e-24	347 - 406	100	60 / 60	plus	ABC05976 ABC05977
JLOC1	JLOC1_22627.1	1329	8e-25	348 - 407	100	60 / 60	plus
Harvest21	ABC05976	1683	3e-25	875 - 934	100	60 / 60	plus	ABC05976
Harvest35	U35_2310	1513	3e-25	868 - 927	100	60 / 60	plus

Contig Sequence (1513 bp)

>U35_2310 1513 Hv_44K_v2
GAACATTTTCCTCCTCCTCCTCTCCCCCGACCTCCCTCCGCATCCACCCGAACGAAGCCG
CGCCGGCGAAGAGCAGGCGAACCTTCCAGCACCCTCCGAGCCCCTCTCCGCGGCCCGCAG
CCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGATGTCAAAGACGCAGA
AGAACAAAGCAACTGCACACCATCTTGGTCTTCTCAAGGCTAAACTTGCAAAATTACGGC
GAGAGTTGCTCACTCCTACAACCAAAGGTGGTGGTGGTGCTGGTGAGGGGTTCGACGTGA
CAAAAAGTGGAGATGCACGTGTTGGTTTGGTGGGCTTTCCTTCGGTTGGGAAATCAACAT
TGTTGAACAAGCTGACCGGAACTTTCTCAGAGGTTGCGTCCTACGAGTTTACAACTTTAA
CATGCATTCCTGGAGTCATTATGTACAAAGGAGCTAAAGTGCAGCTTCTAGATCTTCCGG
GAATTATTGAAGGTGCTAAAGATGGAAAGGGTAGAGGGAGGCAGGTCATCAGCACAGCCA
GGACATGTAATGTTATTCTGATTGTTCTTGACGCCATAAAACCCATAACTCACAAACGTC
TCATTGAGAAGGAGCTTGAGGGATTTGGCATCCGGTTGAACAAGACACCTCCCAATATGA
CATTCAGGAGAAAGGAAAAGGGTGGCATCAATTTTACATCAACAGTAGCGAACACACACT
TGGACCTTGACACAGTAAAAGCAATCTGTAGTGAGTACAGGATTCATAATGCTGATATCT
CCCTGAGATTTGATGCAACAGCAGATGACCTTATAGATGTCATTGAGGGAAGTAGGATCT
ACATGCCTTGCATCTACGTCGTCAACAAAATTGACCAGATCACAGTTGAGGAGCTGGATA
TCTTGGACAAACTTCCCCATTACTGCCCAATCAGTGCGCATCTGGAATGGAACCTTGATG
GACTTCTAGAGATGGTCTGGGAATACCTAGATTTGGTCAGGCTATACACAAAACCCAAAG
GGCTGAACCCAGATTACGAGGATCCTGTCATCTTATCATCCAAGAGGAAAACAGTGGAAG
ACTTCTGCAACCAAATCCACAAGGACATGGCGAAACAGTTTAAATATGCGAAGGTGAAGC
CTCAGAGAGTCGGCAAGGAGCATGAGCTTGAAGACGAGGATGTTGTTCAGATCATTAAGA
AAATATAGCTATACACCTGGGGCGAGCAATGATTTTGTTTTGCAGATCAGGAAGAAGCTC
TCAGCTATGGAACTTTTTGAGAAGCAGCTACCGTAGAACTCGCGTGTTTCTTTCACTAGT
TCTGACGCCCATAGGTGGGCCGCTGTTTGCATAAAACCCGGTTTCCATCGAAAGACAGAA
TGTGGACAGTTTTTGTTTGAACTTGTGCCGAGTAGCCATATGTAATTGTGAGTCTTGCCA
CAACCGCCGAACACATGGAAAGATGCTTGTCTATCTTGAGAAGGTGATAAGATGGTTCTT
ATGAAAAAAAAAA

Homology of Contig U35_2310 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g43470.1	370	protein\|GTP-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g20620.1	369
Arabidopsis v10	AT4G39520.1	369	GTP-binding protein-related \| chr4:18371329-18374000 REVERSE LENGTH=369