barSeed - Barley Seed Development Database

Probe CUST_7250_PI390587928

Source Contig U35_2315

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7250_PI390587928	Hv_44K_v2	CTGGTGACAGAACATGAAATATCTATCCGTAATTTGACTGGCTTGCTTGTTCTTTAAAAA	1602	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.191	1.272	1.139	0.949	0.459	0.434
Raw	2129.727	3469.180	2743.407	3475.117	616.063	636.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4491.1	1718	1e-22	1533 - 1588	100	56 / 56	plus
Harvest21	ABC06035	655	1e-23	13 - 72	98	59 / 60	minus	ABC06035
Harvest35	U35_2315	1674	3e-25	1603 - 1662	100	60 / 60	plus

Contig Sequence (1674 bp)

>U35_2315 1674 Hv_44K_v2
TCTTCTCCGCAGATCAAACGCCAAAACCCTAGGCCGCTCCATCTCCGACGCCGGCGACAC
CCCCCAACCCCCAACCCCTGCGGCGGTCCGCGGTAGCCCAGGCGGAGGAAGCCATGGACA
GCGCCCTCGCGAGCGCGGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCC
ACATCCTCGCCTCCGTCATCTCGTCTTCCCCGCCGGACATCCCCCAGGCCAAGCGCTTCC
TCAACCACATGGTGTCGGATGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGT
TCGCGCAGGAGCTGGGGAAGCTGGAGCCGGACTCTCAGAAGGAGGTCGCCCACTACGCGC
TCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTAGTAGTGATTAGAGAGA
AGCTTGCAGAACTGTATGAATCTGAACAACAATGGTCGAGAGCAGCACAAATGCTTAGTG
GCATTGACTTGGACTCAGGAATCAGGATGCTTGATGACACAAACAAATTATCCAAGTGCG
TCCAGATTGCACGACTCTATTTGGAGGATGATGATGCAGTGAATGCTGAAGCTTTTATCA
ACAAAGCCTCGTTTTTGGTCACAAACAGCAACCAGGAAGTTCTGAACTTACAATACAAGG
TCTGCTATGCGAGAATTTTAGATCTAAAACGTAAATTCTTGGAAGCTGCACTTCGATACT
ATGGTATCTCTCAGATTGAGCAACGCCAAATTGGGGATGAAGAGATTGATGAAAATGCTC
TTGAGCAAGCTCTTAGTGCTGCTGTAACATGCACAATATTGGCTGGTGCTGGCCCACAAC
GCTCTCGCGTTCTTGCTACATTGTACAAGGATGAAAGATGCTCAAAGCTCAAGATATACC
CAATACTGCAGAAGGTTTTTCTTGAAAGGATTTTGAGGAAACCAGAAATTGATGCATTTG
CAGAGGAGCTGAAGCCGCATCAAAAAGCCCTTCTGCCAGACAAGTCTACTGTGCTTGACC
GGGCGATGATTGAGCATAATCTCCTTAGTGCCAGTAAACTTTACACCAATATCAGTTTTG
AGGAGCTTGGAACATTGTTGGGCATTGACCCTAGAAAGGCTGAGAAGATAGCATGTCGAA
TGATCTGTGAAGATAGAATGCGGGGTTCAATTGATCAGGTTGAAGCTGTGATACACTTTG
AGGATGACACTGAAGGGTTGCAGCAGTGGGACCAACAGATTGCTGGGCTGTGCCAAGCGT
TGAACGACATCCTTGACAGCATGTCGAGCAAGGGAATCGCGATACCTGTCTGAGGGAATT
TGTCCACCCGGTCGTTTCGATGGTACCTGTGATAACTTTGATCAACCTGCTGGATACACA
TTTTGTACAGATGTTTTGCCGTTGAAGGTGCAACGAGTACTTTCGGAACCAATTCTGCTG
TACGATCATGTCATGTGAAATTCGTGTGGAAAATGCCGTCCCAGTTATGCGCTCTGGTTT
TCAGTGGGTATTATTGGTTCTACACTCACGCATCTCTCGGAAGAATTAGGTCCAGCGCAA
CGCAAATAGATTTCAGGCTAGGGCTGGTTCTGCAGTATGACGCTGGTGACAGAACATGAA
ATATCTATCCGTAATTTGACTGGCTTGCTTGTTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g10120.2	400	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi1g71340.1	400
Arabidopsis v10	AT5G42970.1	397	\| Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 \| Proteasome component (PCI) domain protein \| chr5:17237470-17240649 REVERSE LENGTH=397