barSeed - Barley Seed Development Database

Probe CUST_7245_PI390587928

Source Contig U35_2320

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7245_PI390587928	Hv_44K_v2	AGGACTTTGTATTTGCTTGCTACACGCAATAAGGTTTGCCAGTGTGCTATCGTCGTTGAC	1047	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5958.1	1263	2e-24	6 - 65	100	60 / 60	minus	ABC05782 ABC07052
JLOC1	JLOC1_3870.1	2648	8e-25	2548 - 2607	100	60 / 60	plus
Harvest21	ABC05782	1129	3e-25	1048 - 1107	100	60 / 60	plus	ABC05782
Harvest35	U35_2320	1129	3e-25	1048 - 1107	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_2320 1129 Hv_44K_v2
CTGGAGCGAAGCTCGCTGCCTCCCTTTGCACAACCTCCTCTCCCCGCGCCGCATCCTCGA
GCAGAAAGAAAGAAAGAGATGAGGTCTCCCGTCCCCGCAATGCTCACCGCCCCTTCGGCA
GCAGCGGCCGTCGCCAAGCCGCTCCCCGCGGCTCGCTCCAGCACGACGGCGGCACTCCAC
GCGACCGGCAGCAGCAGGCGGGACGTGATGACCGGCACCGGCACCGGCGTGGGAGCCGCG
CTGCTGATGGCGCTGTCGCCGCAGCGCGCTCGTGCGGCTTCGGACGACGAGTACGTGACG
GAGACGACGGAAGTGATCGGGAAGGTGCGGTCGACCATCAGCATGGACAAGACGGACCCC
AAGGTGGCGGACGCGGTGACTGAGCTCCGGGAGATGTCCAACTCGTGGGTTGCCAAGTAC
CGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGGACATGTACTCGGCGCTCAAC
GCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGC
ATCCGCATCCTCGAGGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGGCGCTGAAGA
TAATGTGTGTTTCCTTCCGTCATGAGGATGAGGATGAGGATGGGATGGCCATGGGGTACC
TCGCGGTGCTTGTCCCGTGCGTGGGTTCCGATTTTGAGCCTCGACTTTATCAATTGTTTC
TACGACTTGTCTGAATCGGCTCATGATCCACATGGTGAGAATATTGTTGGCCTTCCTTGA
TTTTGTCTTGTACTGTATCAGCGTCTTCCTTGTTCCTCCTTGCATTGCGTCTGCCTGCCC
AGCGCAGTCCAGCTGCCGAGCGGAACGGCTTTGTTCTGTGGATGGCTAGTGTTAGTGGAT
TCACAATGACAATCGTTAGTGTTGTACTGTATCAGCGTCTTCCTTATTCCTCCTTGCATT
GCGTGCCTCAACACAGTCCAGACAGTGCTAGTGGATTCACAATATCATTCTTTAGCTGCG
AGTAGCAATGCTATTGGCAAAACACGAAGGACTTTGTATTTGCTTGCTACACGCAATAAG
GTTTGCCAGTGTGCTATCGTCGTTGACGGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21560.1	166	2e-56	protein\|photosystem II 11 kD protein, putative, expressed
Brachypodium v1_2	Bradi1g63300.1	174	4e-64
Arabidopsis v10	None