barSeed - Barley Seed Development Database

Probe CUST_7243_PI390587928

Source Contig U35_2322

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7243_PI390587928	Hv_44K_v2	CTGTATTCTTAGGACACTACAATGTATTTTGTTATATGACGCCACTTCTGTACGAACTAA	1786	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.383	2.221	1.198	0.696	0.197	0.215
Raw	226.561	330.923	155.557	139.632	13.650	16.731

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18326.1	2006	2e-24	1813 - 1872	100	60 / 60	plus	ABC05527 ABC05530
JLOC1	JLOC1_12680.1	2080	8e-25	1817 - 1876	100	60 / 60	plus
Harvest21	ABC05527	1851	3e-25	1787 - 1846	100	60 / 60	plus	ABC05527
Harvest35	U35_2322	1851	3e-25	1787 - 1846	100	60 / 60	plus

Contig Sequence (1851 bp)

>U35_2322 1851 Hv_44K_v2
GGGGGCGGGGGCGGCGTTGGGGGAGAAATGGCGGCGGAGAGGGACATCGACGACCTGCCG
CGGAACGCGGCCAACTACACGGCGCTCACGCCGCTCTGGTTCCTCGAGCGCGCCGCGCTC
GCGCACCCGGCCCGCGCGTCCGTCGTGCACGGCGCCGTGCGCTACACCTGGGCCGACACC
TACCGACGCTGCCGCCGCCTCGCCTCCGCCCTCGCCCGCCGGTCCGTCGCCCACGGGAGC
ACGGTGGCTGTAATAGCTCCAAATATCCCAGCAATTTACGAAGCTCATTTTGGAGTCCCC
ATGGCTGGAGCAGTGGTCAACTGTGTCAACATTCGATTAAATGCTCCCACAGTTGCATTT
CTGTTGGAGCACTCGTCAGCCGAAGTTGTGATGGTTGACCAAGAATTTTTCTCCCTGGCA
GAGGATTCTTTGAGGATTATAGCAGATCAAAAGAAATGTTCTTTCAAAAAGCCACTTGTA
ATAGTTATTGGTGATCATACCTGTGATCCTTCAGCCCTCCAAGATGCTCTGAGAACAGGG
GCAATCGAATATGAGAAGTTCTTGGAAACTGGCGACCCTGAATTTGCATGGAAACCACCG
CAGGATGAATGGAAGAGTATTGCCTTAGGTTATACTTCTGGAACAACATCTAGCCCAAAG
GGCGTGGTTTTGCATCACAGGGGTGCTTACCTAATGTCACTCAGTGGTGCTCTTGTATGG
AAAATGAACGACGGCGCGGTTTACCTGTGGACTTTGCCGATGTTCCACTGCAACGGCTGG
TGCTATACATGGACGCTTGCTGCTATCTGTGGAACAAGCATATGTCTTCGTCAGGTCACA
GCGAAGGCTATCTTCTCAGCGATAGCCAACCAAGGAGTAACTCACTTCTGTGGGGCGCCA
GTTGTGCTCAACACCATCATCAACGCCCCTCCAGTTGACACCATTCTCCCGCTGCCTCGC
GTTGTCGATGTCATGACTGCTGGCGCTGCCCCACCGCCCTCAGTCCTTGCCGCAATGTCG
AAGCTCGGTTTCCGTGTCTCTCATACGTATGGCCTCTCGGAGACATATGGGCCATCTACG
GTGTGTGCATGGAAGCCAGAGTGGGACATCCTGCCAGATGACGAGCGTGCTCGGCTCCAA
TCTCGCCAGGGCATTCGCTATGTAGGCCTGGAGGGCCTTGACGTGGTCGACCCCAAGTCC
ATGGCGCCAGTCCCAGCAGACGGCTCCACCCTCGGAGAGATTGTCATGCGAGGCAACGCC
GTCATGAAGGGTTACCTGAAGAATCCCAAGGCCAACGCCGAGGCATTTGAAAACGGGTGG
TTCCATTCCGGTGATCTGGGCGTTCGACACCCGGACGGCTACATCGAGGTGAAGGACCGA
GCCAAGGACATCATCATTTCCGGCGGGGAGAACATCAGCAGCCTGGAGGTGGAGAAGGCG
GTCTACATGCACCCGGCGGTGCTCGAGGCGTCGGTCGTGGCGCGGGCCGACGAGCAGTGG
GGGGAGTCGCCATGCGCCTTTGTCACGCTCAAGGACGGCGTGGACAGCTCCGACGAAGCA
GCAATGGCTGCTAACGTGATCAAGTTCTGCCGCGAGCGCCTGCCGGGCTACTGGGTCCCC
AAGTCCGTGGTGTTCGGGCCGCTGCCCAAGACGGCAACGGGTAAGATCAAGAAGCATGAG
CTGAGAGCTAAGGCCAAGGAACTGGGCCCGGTCCGGAAGAGCAGGATGTGAGCTAGGTTA
AAACGTCTTGTGCCCTCGTCCAGAGCTGTCGTTTGGCGTCGGTGTACTGTATTCTTAGGA
CACTACAATGTATTTTGTTATATGACGCCACTTCTGTACGAACTAANCGCG

Homology of Contig U35_2322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g19240.1	568	protein\|AMP-binding enzyme, putative, expressed
Brachypodium v1_2	Bradi1g64640.1	568
Arabidopsis v10	AT3G16910.1	569	\| Symbols: AAE7, ACN1 \| acyl-activating enzyme 7 \| chr3:5773231-5775411 REVERSE LENGTH=569