barSeed - Barley Seed Development Database

Probe CUST_7240_PI390587928

Source Contig U35_2325

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7240_PI390587928	Hv_44K_v2	CTGTCGTTTGGCGTCGGTGTACTGTATTCTTAGGACACTACAATGGTATTTGTGTTATAT	724	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.383	2.106	1.188	0.688	0.232	0.228
Raw	594.656	825.863	405.880	365.917	44.278	47.463

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12680.1	2080	6e-21	1796 - 1853	97	58 / 60	plus
Harvest21	ABC05530	784	3e-25	1 - 60	100	60 / 60	minus	ABC05530
Harvest21	ABC05527	1851	2e-21	1766 - 1823	97	58 / 60	plus	ABC05527
Harvest35	U35_2325	784	3e-25	725 - 784	100	60 / 60	plus
Harvest35	U35_2322	1851	2e-21	1766 - 1823	97	58 / 60	plus

Contig Sequence (784 bp)

>U35_2325 784 Hv_44K_v2
CATCACAGGGGTGCTTACCTAATGTCACTCAGTGGTGCTCTTGTATGGAAAATGAACGAC
GGCGCGGTTTACCTGTGGACTTTGCCGATGTTCCACTGCAACGGCTGGTGCTATACATGG
ACGCTTGCTGCTATCTGTGGAACAAGCATATGTCTTCGTCAGGTCACAGCGAAGGCTATC
TTCTCAGCGATAGCCAACCAAGGAGTAACTCACTTCTGTGGGGCGCCAGTTGTGCTCAAC
ACCATCATCAACGCCCCTCCAGTTGACACCATTCTCCCGCTGCCTCGCGTTGTCGATGTC
ATGACTGCTGGCGCTGCCCCACCGCCCTCAGTCCTTGCCGCAATGTCGAAGCTCGGTTTC
CGTGTCTCTCATACGTATGGCCTCTCGGAGACATATGGGCCATCTACGGTGTGTGCATGG
AAGCCAGAGTGGGACATCCTGCCAGATGACGAGCAGTGGGGGGAGTCGCCATGCGCCTTT
GTCACGCTCAAGGACGGCGTGGACAGCTCCGACGAAGCAGCAATGGCTGCTAACGTGATC
AAGTTCTGCCGCGAGCGCCTGCCGGGCTACTGGGTCCCCAAGTCCGTGGTGTTCGGGCCG
CTGCCCAAGACGGCAACGGGTAAGATCAAGAAGCATGAGCTGAGAGCTAAGGCCAAGGAA
CTGGGCCCGGTCCGGAAGAGCAGGATGTGAGCTAGGTTAAAACGTCTTGTGCCCTCGTCC
AGAGCTGTCGTTTGGCGTCGGTGTACTGTATTCTTAGGACACTACAATGGTATTTGTGTT
ATAT

Homology of Contig U35_2325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19240.1	568	3e-100	protein\|AMP-binding enzyme, putative, expressed
Brachypodium v1_2	Bradi1g64640.1	568	3e-97
Arabidopsis v10	AT3G16910.1	569	4e-80	\| Symbols: AAE7, ACN1 \| acyl-activating enzyme 7 \| chr3:5773231-5775411 REVERSE LENGTH=569