barSeed - Barley Seed Development Database

Probe CUST_7237_PI390587928

Source Contig U35_2328

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7237_PI390587928	Hv_44K_v2	CTTACCGATGGTTAGAAAATTCAGGCACCGTAATTATAAGCAAATGGTGTGGCTAAAAAA	1430	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	49.926	17.271	1.417	0.687	0.739	0.658
Raw	470.413	226.655	18.661	12.800	2.865	3.409

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45108.3	1074	9e-22	960 - 1014	100	55 / 55	plus	ABC17740
JLOC1	JLOC1_29274.1	1149	5e-22	962 - 1016	100	55 / 55	plus
Harvest35	U35_2328	1544	3e-25	1431 - 1490	100	60 / 60	plus

Contig Sequence (1544 bp)

>U35_2328 1544 Hv_44K_v2
GGAACAATCAGCAAGAGCAGCCTCATCTTTGGTTGGCCGTAACTGCCGCCGTCACAAAGA
TCAGATGTATCTGGTGAAGGACATCGGCGGAGCCATCGGGCTGATGGCGGCGGCCTTGGT
GCTCCTCGGCACCTGGCCGGTCGTCCTCGCCGTGCTGGAGCGCCGGGGACGGCTGCCGCA
GCACACGTACCTCGACTACTCCATCACCAACTTCCTGGCCGCCGTGCTGATCGCCCTCAC
ATTCGGCCAGATCGGCGGCGACACGCCGGAGACGCCCAATTTCCTCACTCAGCTCACCCA
GCCGCAGGACTACTGGCCGTCCATCATGTTTGCGCTGGCGGGCGGCGTGGTGATCACCCT
CGGCACCGTGGCCACGCAGTACGGCTGGGCATACGTCGGGCTTTCGGTCACCGAGGTCAT
GGCCTCAAGTCTCAAGGTTGTCATAGGGACGACACTGAACTATTTTCTGGACGGCCGGAT
CAACAGGGCGGAGGTTCTTTTCCCCGGCGTCGGATGTTTTCTGATTGCAGCGTGCCTAGG
CTCACTTGTCCACTCCTCTAATGCTGCTGACAATCAGGAGAAGCTATCAAACTCCAGAAA
CTACTCTACTGGGAACACTGCAAAGGAAGATCTCACCCAGCGCCTCCTTGAAGAAGAGGA
ACCAAAGGATTGTGAAGAAGCAAAGCCTGCACTACCAAAGGCGGTGGAGAAAGTCGAGGC
AGGAACAGCAGATTTCCTTATTGATCTCGAGGACAAAAGATCAATCAAGGTCCTCGGCTC
CAACACGCTGGTGGGGCTGGCGATCGTGACGTTCGCGGGGGTGTGCTACTCGCTGTTCGC
GCCGGCGTTCAACCTGGCGACCAACGACCAGTGGCACACGCTGCGCGACGGCGTGCCGCA
CCTGGTGGTCTACACCGCCTACTTCTACTTCTGCCTCTCCTCGCTGGTCGTCGGCGTGGC
GCTCAACGTGTGGTGCCTCTACCGCCCCGTGGCCGGCGTGCCGCGGTCGACGCTGCGGGC
GTACCTCGCCGACGGGGAGGGGAGGGGGCTGGCGCTGCTGGCGGGGATGGTGTCCGGGCT
GGGCAACGCGTTCACGTTCATGGCCGGGCAGGCGGCCGGGTACGCGGCGGCGGACTCCGT
GCAGGCGCTGCCGCTGGTGAGCACGTTCTGGGGCGTGGTGCTGTTCGGGGAGTACCGGAG
GTCGTCGAGGAGGACGTACACGCTGCTGGGGAGCATGCTCTTCATGTTCGTCGTCGCCAT
GTCCGTGCTCATGGCCTCCTCCGCGCACAGGAAGCCGCTCTGACGCAACCAACGCTGCTC
ATGCATGGCATGGCGATCGGGAGCTTGGATAGCGACGGCAGAGAGGCTAGCAAGTTCTTC
GATGAGGACGGATGTTGTGTAAACTTGGACGAGTGCGATGCATGCCACATCTTACCGATG
GTTAGAAAATTCAGGCACCGTAATTATAAGCAAATGGTGTGGCTAAAAAAAAAAAAAAAA
AATCCCTAATCAAGTCTCAATTAAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g31860.3	419	0.0	protein\|ureide permease, putative, expressed
Brachypodium v1_2	Bradi4g06740.1	416	0.0
Arabidopsis v10	AT2G03590.1	390	4e-158	\| Symbols: ATUPS1, UPS1 \| ureide permease 1 \| chr2:1095129-1096711 FORWARD LENGTH=390