barSeed - Barley Seed Development Database

Probe CUST_7236_PI390587928

Source Contig U35_2329

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7236_PI390587928	Hv_44K_v2	TATATTTTGGTTGAGGAAGGCACGGCAAAAACTTCAGTTGATGGCGTATTTGCTGCTGGT	609	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.866	2.038	1.379	0.856	0.542	0.509
Raw	25.363	45.006	25.502	25.081	3.894	5.153

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358552	1979	2e-24	1165 - 1224	100	60 / 60	plus	ABC05618
MLOC	AK360358	1943	2e-24	1098 - 1157	100	60 / 60	plus	ABC05618
JLOC1	JLOC1_29638.2	1121	8e-25	846 - 905	100	60 / 60	plus
JLOC1	JLOC1_29638.1	1101	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC05618	2040	3e-25	828 - 887	100	60 / 60	minus	ABC05618
Harvest21	ABC05617	713	3e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_2330	2040	3e-25	1154 - 1213	100	60 / 60	plus
Harvest35	U35_2329	713	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_2329 713 Hv_44K_v2
GAAAATGCGGAAGCAAGCGGAGCGGTGGGGTGCAGAGCTTCACCAAGAGGATGTCGAGTT
TGTGGATGTGAAGAGCAGACCGTTTGTTATTCGTAGCAGCGACCGAGAGGTGAAATGTCA
TAGTGTAATCATTGCAACTGGAGCTACTGCGAAGCGACTTCGATTACCTCGTGAAGAAGA
ATTTTGGAGCAGAGGTATCAGCGCATGTGCAATATGTGATGGAGCATCACCTCTGTACAA
GGGTCAAGTTCTTGCGGTCGTTGGAGGTGGAGATACAGCTACCGAGGAAGCGATATATTT
GACAAAATATGCGTGCCATGTTCATTTACTTGTTCGAAGGGACCAACTACGAGCATCCAA
AGCTATGCAGGACCGGTTGATTATGGCGAATGTTTCAGAGTACTCAACAACCCCAACATA
ACAGTACATTTCAATACAGAAGCTGTGGATGTTGTCGGCAATACCAAAGGACAGATGTCC
GGTATTCAGTTGAGGAGAATCGATACTGGAGAGGAAAAAGTTCTTGAAGTGAAAGGTCTA
TTTTATGGGATAGGGCATACTCCAAATAGTCAGCTGCTAGAAGGTCAAATTGAACTTGAT
AGTTCTGGATATATTTTGGTTGAGGAAGGCACGGCAAAAACTTCAGTTGATGGCGTATTT
GCTGCTGGTGATGTGCAGGATCATGAATGGAGGCAAGCCGTTACTGCAGCTGG

Homology of Contig U35_2329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46410.1	516	4e-76	protein\|bifunctional thioredoxin reductase/thioredoxin, putative, expressed
Brachypodium v1_2	Bradi1g19140.1	509	5e-81
Arabidopsis v10	AT2G41680.1	529	2e-68	\| Symbols: NTRC \| NADPH-dependent thioredoxin reductase C \| chr2:17376349-17379028 REVERSE LENGTH=529