barSeed - Barley Seed Development Database

Probe CUST_7224_PI390587928

Source Contig U35_2341

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7224_PI390587928	Hv_44K_v2	CCCAGCTCAGGATGCTTTTCCCTGAGATTATATATGTTGTTATCGCAAGGTTTGAAAAAA	2317	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.155	1.674	1.432	1.027	0.437	0.497
Raw	246.682	558.625	408.091	449.791	69.578	84.746

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05723	2388	3e-25	2318 - 2377	100	60 / 60	plus	ABC05723
Harvest35	U35_2341	2388	3e-25	2318 - 2377	100	60 / 60	plus

Contig Sequence (2388 bp)

>U35_2341 2388 Hv_44K_v2
CCAATCCAATCTTCGCATCCAATCTTCACTCTTTCTCCTGGAACCCTAAGCCCCCTCAGG
TACATGACCCACCCTTCCTCGTCCTCCTCCTCCGCCCCGGTGGCCGCCCCGGATGACCCG
ACCTCCCTCGCCCCGGGCTTCCGCTTCCACCCAACAGACGAGGAGCTCGTCTCCTACTAC
CTCAAGCGCAAGGTGCTCGGCCGCCCGCTCAAGGTCGACGCCATCGCCGAAGTAGACCTC
TACAAGCTCGAGCCATGGGACCTCCCCGCGAGGTCGCGCCTCCGCAGCCGCGACTCCCAG
TGGTACTTCTTCAGCCGCCTCGACCGCAAGCATGCCAACCGCGCGCGCACCAACCGCGCC
ACTGCAGGAGGCTACTGGAAGACCACCGGCAAGGACAGGGAGGTCCGCCATGGCGCTAGG
GTCGTCGGGATGAAGAAGACGCTCGTCTTCCACGCTGGCCGCGCGCCTAAGGGCGAGCGC
ACCAACTGGGTCATGCACGAGTATCGCCTTGAGGGCGATGGCGCAGCCGGGATCCCACAG
GATTCATTTGTAGTGTGCCGAATCTTCCAGAAGGCTGGGCCTGGTCCTCAAAACGGGGCA
CAGTATGGAGCACCCTTCGTCGAGGAGGAGTGGGAGGCTGATGAGGATGATGATTTTGGT
CCTCTGCCTGTGGAGAGGAACCTCGTTGTTGAGCATGAGGCTCCTGGTGCTATGGAGAAA
GGATATCTTCAGATGAATGATCTCATTCAGGACTTGGCGGGTCAAAATGAGAACGGCAGT
GTTGCTTTGCCAGTTTCTGACACTTCAAATACCAGCAGCCATTCTGAAGATGTAGAAGGA
AATTCAGGGGACATTTTGAATGACCCAAGTCTTGGTTCTAATTTTCTTCAGTATATTCAT
CCTGGAGAACAAAATAGCCCAATGCTTAACGGAAATATGTTATCTAATGCCAATGTTGGA
GATTTTCTTAATAGTTCTAGCCCGAATGATGAATTCCTAGAGCTGAAGGATTTGGAGTTA
CCTATAGGCAATGATTCCACTATCTGGCCTTCTGATGGTTGGGCCTGGAAAACTCCTTTC
TCCTCGGATGCTGTAAATGGGGCCAACAATGAGGTTCCTCCGATCATTGGTGATCAGCCT
TTCCAGCCAGATGAGCTGGCCCAGTTGTTGCAGACACTACAAGATGACTCCTCCCCGTTG
GGCTCAACTAGCACTGATCTTCCATACTCTTCTATTACAAATTCTGTCAAGCCAGAAGAT
GATTCTCTGATGTTTTTTGATGCGCCCTTTGACACGTTGTTCAGTGATGGATTTAGACAG
ACGAATGGATTTCTTGGCTCCCCAGCAACCATTCTATCTGGTATCGAGACACTGGATGAT
GGTATCCCATACTATGATGCAATGGACGATAACTTATTTAATGATATGATGTGCTCTGTA
CAGCAGTCGGCTGGGAGCAGCTCCCATGTCTTTAATGGCCCAGTTCTTACTCAAGAGGTC
AACAATCCCAACTATACATATAGTCCAACTCAAAAGGTTGTAGAACCTAATTTTGTAGTT
GGTGCCCCGTCGTCCGCTAGGTTACCTGAAGCTGGTAGTCAGTTAAATTGTGTTGTTTTA
CCAGATTCTCGGGCTAAGAATGGGTCCATGGGAAAGCGTTTTGTAAAGATGCTGGATTCA
ATCTCGGCTCCCCCTGCTTTTGCAGCAGAGTTCCCAGGCAAATCCTTGTCTGGTGTGCAC
CCTAACACCATCAGTGTGTCTACTGAAGTAATCAGCATAGGAAGCTTAACTGTTGCTTCT
CGACAAGGTAAGTGGTCGTTCCAGAAGGATGAAGACATGGAGCTGCTTTTCTCTTCCACA
GGTTTCCAGCCTGATAATCGCATACACTATGGTGGCTGCAACACGGTGACTGCGGTGCTG
CGTGGCGGCTTCTGTCTCTTTTTTCTGTCAGCAATAATGCTCCTGGTGAGCTACGAGGTG
GGCCTGTGCATCTACGGCAAGTAACCTGCCCGCCCGCCCGGTATCGGTATAAAAAGATTA
TTATGACGTTAGGTAATTGTATGTTTATTGAGGCTTGAACTGGGGATCTCCTTGCATGAC
ATGACCTCCTTGTGCGTTTGTTAAATTCGACAGCATTAGCGGTACCGTTTTGCAGCCCCG
AGAGTTAGTGCTGTATCTATGAACTCATCCAGTGCTATTAGTATTTTAGAACTGCTTAAT
AATCAAAAAAAAAAAAAAAAACAATTATTCATGTTCGTTAGGCAGTTTTAGCGTGGAATG
TTGTAAATACAAAATAGTATTAAGTTGGCGGTTGAATCCCAGCTCAGGATGCTTTTCCCT
GAGATTATATATGTTGTTATCGCAAGGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2341 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44820.1	657	0.0	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi3g12470.1	654	0.0
Arabidopsis v10	AT3G10500.1	549	3e-79	\| Symbols: anac053, NAC053 \| NAC domain containing protein 53 \| chr3:3271718-3273887 FORWARD LENGTH=549