barSeed - Barley Seed Development Database

Probe CUST_7223_PI390587928

Source Contig U35_2342

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7223_PI390587928	Hv_44K_v2	GAGGAATAATGTGTACAACAAAAAATGGGAGAGAGACGTCGCTTATCTTCCGCCAAAAAA	1206	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.151	4.497	1.207	0.838	0.204	0.403
Raw	426.220	611.407	138.886	159.779	12.692	27.265

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355768	1279	3e-21	1226 - 1279	100	54 / 54	plus	ABC09740 ABC09742
JLOC1	JLOC1_41977.1	1732	6e-21	1518 - 1573	98	55 / 56	plus
Harvest21	ABC09740	464	3e-25	394 - 453	100	60 / 60	plus	ABC09740
Harvest21	ABC09742	1279	1e-23	1209 - 1268	98	59 / 60	plus	ABC09742
Harvest35	U35_2342	1277	3e-25	1207 - 1266	100	60 / 60	plus

Contig Sequence (1277 bp)

>U35_2342 1277 Hv_44K_v2
CAGGCAGGCAGCTAATGGTGGTGGGTAGCACGTAAGATTATCAGACCCGATCGACCGAGT
CCAAGAAGACTTGTGCTGCAGATAGCAATGGACAGGACGAGGCGCGGGAGGCGCCTGCTC
GTGCCGCTCTGCTTCCTCTGCCTGGCCTTGCTGCTCCCCGGCGCGCTGCTGGCGTCGCCG
GCGGCCGGGAGGAAGCGGCGGCAGGCCGGGTTCGACCACTACGTGCTGGCCCTGCAGTGG
CCGGGCTCCGTCTGCCGCCAGACCAACCACTGCTGCAGCTCCAACGGCTGCTGCCGATCA
AACCCTCTCAACTGGTTCACAATCCATGGGCTGTGGCCGCAGTACAGCTACGGTGGATGG
CCGTCCTGCTGCAGACCAACCACCACATTCAACATGAACAAGATCGCGATGCTGAGGCCG
ATCCTGGAGAGGTACTGGCCGTCGCTCTACTGCGGCGACACCTCCACCTGCTTCGGCGGA
AGAGGCCCCTTCTGGGCCCACGAGTGGGCGACTCACGGGACGTGCGGCTACCCTGAGATA
CAGGACGAGTACGACTACTTCTCCACGGCGCTCTACCTCTACAGCAAGTACAACGTCACG
AAAGCACTGAGGAAAGCGCACATCTACCCGCGGAACGGCAGGAAGTACGCGGTGGCGCAC
ATCGTGGCCGCCATCGACCACGCATTCGGGCGGCTGCCGCACCTCGTCTGCAAGAACGGC
TCCCTGCAGGAGCTCAGGCTCTGCTTCCACAAGGACTACCAGCCCCGGGATTGCGGGTCG
GAGGAGGACGACGCGTGGTCGTCGAGCAGGAGAAGCCATTGCCCTCGCTACGTCAACCTC
CCGTCCTACCTGCAGTCTGCGTTGGGCAACGCCACGGAGGTGCGCCTGCGGAACGCAGCG
GAGAACGAGCGGCGCGCACACGGGCAGAGCTACGTATAGCGAGCAGCCACGGACGGACGA
CTGCTGTCGTACTGCTCCGTCCAGGTGTGTCCTGAAGCCTGACGACGGACGCATGCATGG
CCGAGGCGCCATCGATCGACCACAGGCGCGCAGTCGTCGGTTCATGCCCCTGTGATTTAT
TGGTTCTTCTGCGCATTCGCTTGCAGTGTGTGTGTGTGTGTAGGCCCTCGTCTGCACAAA
GAATCGACGTTGCAGTCCTGTACGTATATGATGATATCGAGCATCAAGCAATATTGTGGT
AGCATCGAGGAATAATGTGTACAACAAAAAATGGGAGAGAGACGTCGCTTATCTTCCGCC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_2342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67190.1	279	9e-131	protein\|ribonuclease T2 family domain containing protein, expressed
Brachypodium v1_2	Bradi2g57620.1	285	2e-157
Arabidopsis v10	AT2G39780.1	259	2e-72	\| Symbols: RNS2 \| ribonuclease 2 \| chr2:16591256-16593515 FORWARD LENGTH=259