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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7220_PI390587928Hv_44K_v2GGAGGACTTCGATCATAAATTGTAACCACGTAACTTATGAGAAGGAGATAATGATGATAA2448GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 6.5462.6811.1580.8500.3110.435
Raw 7135.9404933.8971815.9672287.273264.786411.246



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_62475.223472e-2417 - 7610060 / 60minus ABC05703 ABC46678
MLOCMLOC_62475.138262e-24114 - 17310060 / 60minus ABC05703 ABC46678
JLOC1JLOC1_40883.324468e-252068 - 212710060 / 60plus
JLOC1JLOC1_40883.224448e-252066 - 212510060 / 60plus
JLOC1JLOC1_40883.126268e-252248 - 230710060 / 60plus
Harvest21ABC466781763e-2544 - 10310060 / 60minusABC46678
Harvest21ABC0570325523e-252449 - 250810060 / 60plusABC05703
Harvest35U35_234525523e-252449 - 250810060 / 60plus



Contig Sequence (2552 bp)

>U35_2345 2552 Hv_44K_v2
CGCTCTCGCAAGTGAGTGACACTTGTGACAGTTCGGACGCACACTAGAGCCATGGGACGT
CGCACTCACGTCGTGCTAGCCGCAGCGGCGCCAGCGCTGCTGCTCGTCCTCCTTCTCCGG
CTGCACGCGGCCGTGGCCGCCGACCCGCCCTTCTCCTGCGGCGCGCCGTCGAGCGCGGCG
TTCTGCGACCGGAGGCTGCCGATCGAGCAGCGGGCGGCGGACCTGGTGTCGAAGCTCACT
CTGGAGGAGAAGATCTCGCAGCTCGGCGACGAGTCGCCGGCCGTGGACCGGCTGGGCGTG
CCGGCGTACAAGTGGTGGTCGGAGGCGCTGCACGGCGTGGCCAATGCCGGCCGCGGCGTC
CACCTGGACGGCCCGCTCCGCGCCGCCACCAGCTTCCCGCAGGTCATCCTCACCGCCGCC
TCCTTCAACCCGCACCTCTGGTACCGCATCGGCCAGGTGATCGGCACGGAGGCGCGGGGC
GTGTACAACAACGGGCAGGCGGAGGGGCTGACCTTCTGGGCGCCCAACATCAACGTGTTC
CGGGACCCGCGGCGGGGGCGGGGCCAGGAGACGCCCGGCGAGGACCCGACCATGACGGGC
AAGTACGCCGCCGTGTTCGTCCGCGGCGTGCAGGGCTACGGCATGTCCGGCGCCATCAAC
TCCTCCGACCTGGAGGCCTCCGCCTGTTGCAAGCACTTCACCGCCTACGACCTCGAGAAC
TGGAAGGGCGTCACCCGCTTCGCCTTCGACGCAAAGGTGACGGAGCAGGACCTGGCAGAC
ACGTACAACCCGCCGTTCAAGAGCTGCGTGGAGGACGGCGGCGCCAGCGGCATCATGTGC
TCCTACAACCGCGTCAATGGCGTGCCCACCTGCGCCGACCACAACCTGCTCTCCAAGACC
GCCAGAGGCGACTGGAGCTTCAACGGATACATCACGTCGGACTGCGACGCCGTGGCCATC
ATCCACGACGTGCAGGGGTATGCCAAGGCGCCGGAGGACGCGGTGGCAGATGTCCTCAAG
GCCGGGATGGACGTGAACTGCGGCGGCTACATACAGACGCACGGCGTGTCGGCGTACCAG
CAGGGCAAGATCACGGGGGAGGACATCGACCGGGCGCTCCGCAACCTCTTCGCCATCAGG
ATGAGGCTGGGCCTCTTCAACGGCAACCCCAAGTACAACCGGTACGGCAACATCGGCGCC
GAACAGGTGTGCAGCAAGGAGCACCAGGACCTGGCCCTGCAGGTGGCGCGGGACGGCATC
GTCCTGCTCAAGAACGACGGCGCCGCGCTGCCCCTCTCCAAGTCCAAGGTCTCCTCCCTC
GCCGTCATCGGGCCCAACGGCAACAACGCGTCGCTGCTGCTCGGCAACTACTTCGGGCCG
CCCTGCATCTCCGTCACCCCGCTCCAGGCGCTGCAGGGGTACGTCAAGGACGCCCGGTTC
GTCCAGGGCTGCAACGCCGCCGTCTGCAACGTGTCCAACATCGGCGAGGCCGTGCACGCG
GCCGGCTCGGCGGACTACGTCGTGCTGTTCATGGGGCTGGACCAGAACCAGGAGCGGGAG
GAGGTGGACAGGCTCGAGCTGGGGCTCCCCGGGATGCAGGAGAGCCTCGTCAACAGCGTG
GCCGACGCGGCCAAGAAGCCGGTGATCCTGGTGCTGCTTTGCGGTGGCCCCGTGGACGTG
ACGTTCGCCAAGAACAACCCTAAGATCGGCGCCATTGTCTGGGCTGGTTACCCTGGCCAG
GCCGGTGGCATCGCCATCGCCCAGGTCCTCTTCGGCGACCACAACCCCGGTGGGAGGCTG
CCGGTGACGTGGTACCCGAAGGAGTTCACGGCGGTGCCGATGACGGACATGCGGATGCGC
GCCGACCCGTCCACGGGCTACCCGGGGCGCACCTACAGGTTCTACAAGGGCAAGACCGTG
TACAACTTCGGCTACGGCCTGAGCTACTCCAAGTACTCCCACCGCTTCGCGTCCAAGGGC
ACGAAGCCGCCGTCCATGAGCGGCATCGAGGGCCTCAAGGCGACGGCAAGGGCGTCGGCG
GCGGGCACGGTGAGCTACGACGTGGAGGAGATGGGCGCGGAGGCGTGCGACAGGCTCCGG
TTCCCGGCGGTGGTGCGGGTGCAGAACCACGGGCCCATGGACGGCAGGCACCCGGTGCTG
CTGTTCCTGCGGTGGCCGAACGCGACGGACGGGCGGCCCGCCAGCCAGCTGATCGGGTTC
CAGAGCGTGCACCTGCGGGCGGACGAGGCCGCGCACGTGGAGTTCGAGGTGAGCCCCTGC
AAGCACTTGAGCCGGGCGGCGGAGGACGGCCGCAAGGTGATCGACCAGGGCTCGCACTTC
GTCAGGGTCGGCGACGACGAGTTCGAGTTGAGCTTCATGGCCTGAGCCGGCCGGCCGGCG
GCCGGCGGTTGGATCGATCGAACACGATAAACCTGCTGCTTCGGCAGAGGAGGACTTCGA
TCATAAATTGTAACCACGTAACTTATGAGAAGGAGATAATGATGATAAATTAAAAGCGAG
ATCATCCTTCTTTCAAAAAAAAAAAAAAAAAA



Homology of Contig U35_2345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g51620.17810.0protein|glycosyl hydrolase family 3 protein, putative, expressed
Brachypodium v1_2Bradi3g59020.17870.0
Arabidopsis v10AT1G78060.17670.0Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767