barSeed - Barley Seed Development Database

Probe CUST_7218_PI390587928

Source Contig U35_2347

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7218_PI390587928	Hv_44K_v2	ATGTTGCTGACGATTAGTTTGGATGGAAGTTTCTGTGTGGAAGGTTGTACATGTGCTGAT	914	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357006	1030	3e-21	888 - 948	97	59 / 61	plus	ABC05939 ABC05940
Harvest21	ABC32313	580	3e-25	515 - 574	100	60 / 60	plus
Harvest35	U35_2347	974	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_2347 974 Hv_44K_v2
GGCCGGCGTCTCCTATCTACGCGCACCACGCAGCGCTCCGCCCCTCCCCACCCACCTGCT
GACGCGCCCCATGCGCCGCCGGCCGCCTCCTGCCCCGTCCTCACTCCCGGAGTTCCGCGC
GGCCGGCGTCTCCTATCCACACGCACCACGCAGTGCTCCGTCCCTCCCCACCCACCTCCT
GACGCGCCCCGTGCGCCGCCGGCCGCCGGCGCCTCCTGCCCCGTCCTCACTCCCGGAGCT
CGAATGGGCCGAACTGCGCCGCTAGGGCCGCCCCGCGCCAGCCACCCCCGGCGCCTCCTC
CGGCCTCCTCCGCCTCCCGTGCCCCTCCTCTCCACCGACCGGCTCCCCGGAGCATCTGGT
GGTGGAGGAGATCCTCACCGACGGGGGTCACCGGCGTCGAGGTCAACCTCCTAGAAACAA
AGTTTGGGTTTGATGATGCCTTCAACTACAAGAAGGAGCAGGACCTGAATGCCACACTGA
AGAGGTGCTTCCCGGAGGGCATCGACATCTACTTTGAGAATGTGGGTGGCGCGATGCTGG
ACGCGGTGCTTGTCAACATGAGGTTGCATGGGCGGGTGTGTGTGTGCGGGATGATCTCGC
AGTACAACCTGGAGCAGCTCGATGGCGTGCGCAACCTCTTCTACATCGTAGCCAAGCGCA
TCCGCATGGAGGGGTTCGTCGTGATGGACCACTACGGCACCTACAGAAAGTTTGAAGAGG
AGATGGCCGGTTACCTCAAGGAAGGAAAGATCACCTACGTGGAGGATGTCACCGATGGGA
CCGAGAGCTTCCCGACGGCTCTCATTGGGCTCTTCTACGGGCGCAACGTCGGAAAGTAGC
TGGTGGCCGTCGCATGCGAGGAGCCCTCCTGGATCGAGAAGTGCTGATGTGCCTTCAGAG
ATCAGAATTGATAGATGTTGCTGACGATTAGTTTGGATGGAAGTTTCTGTGTGGAAGGTT
GTACATGTGCTGAT

Homology of Contig U35_2347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g12514.1	321	1e-71	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi4g39980.1	346	2e-85
Arabidopsis v10	AT5G16970.1	345	2e-67	\| Symbols: AT-AER, AER \| alkenal reductase \| chr5:5576291-5578001 REVERSE LENGTH=345