barSeed - Barley Seed Development Database

Probe CUST_7217_PI390587928

Source Contig U35_2348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7217_PI390587928	Hv_44K_v2	AATTATGGGCATGCCTGGCCTTACTGCCTATGTTGGATTTTTTGATGTGGCCAAGCCAAA	576	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.318	0.439	1.605	2.427	1.044	1.185
Raw	142.934	305.259	986.087	2340.157	362.331	444.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12234.1	1481	2e-23	884 - 941	100	58 / 58	minus	ABC05939 ABC05940
JLOC1	JLOC1_8203.1	1923	1e-23	651 - 708	100	58 / 58	plus
Harvest21	ABC05937	676	3e-25	495 - 554	100	60 / 60	plus
Harvest21	ABC34073	675	2e-21	351 - 403	100	53 / 53	plus
Harvest35	U35_2348	758	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_38207	675	2e-21	351 - 403	100	53 / 53	plus

Contig Sequence (758 bp)

>U35_2348 758 Hv_44K_v2
GTGCGGTCATCCCGTCCTCCCGGCCGCCCCACGCATATTAAGCGCACCACGCACCCGCTC
CATCCGCCACACACGAACCGTACCCGACCGAACGCGCGGCTCACACAGTATCTAGACCAC
CACACATCGCCAACTCGTCGGCGCGTCCGAGGAAGGAAGGAAGGGAGCAATGGCGGCGGC
GGCGGCGGAGGTGGGCAACAGGAGGGTGATCCTGAAGCGCCACGTGACGGGGTTCCCCAC
CGAGGACGACATGGAGGTCGTCCCCGCGACGGCGCGCCTGGCCGTGCCCCCCGGGTCGGC
CGCCGTGGTGGTCAAGAACCTCTACCTCTCCTGCGACCCCTACATGCGCAGCCGGATGTC
CCGCCACGACGAGCCCAGCTACGTCCCGGACTTCGTCCAGGGGGAGGTGTTAACCACTCT
GGGCGTAAGCAAGGTGGTAGAATCCGGGCATCAGGATTACAAGGCCGGTGATCTGGTGTG
GGGAATGACAGGATGTGAAGAGTACACTTTGATCACGAACCTGCAGACACATTTCAAGAT
CAACCATCCCGAGTTGCCGCTGTCGTACTACACAGGAATTATGGGCATGCCTGGCCTTAC
TGCCTATGTTGGATTTTTTGATGTGGCCAAGCCAAAGAAGGGCGACTATGTCTTTGTGTC
CGCAGCCTCAGGTGCCGTCGGACAGCTTGTCGGGCAGCTTGCCAAGATCTCTGGCTGCTA
TGTGGTTGGTAGTGCCGGTTCCGATGAGAAGGTCAACC

Homology of Contig U35_2348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g12590.1	347	2e-100	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi4g39980.1	346	4e-109
Arabidopsis v10	AT3G03080.1	350	2e-76	Zinc-binding dehydrogenase family protein \| chr3:698530-700278 REVERSE LENGTH=350