barSeed - Barley Seed Development Database

Probe CUST_7216_PI390587928

Source Contig U35_2349

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7216_PI390587928	Hv_44K_v2	CCAGGAAGCTGGAATGAACTAATAATGTTTACTAGTATTACAAAAGGGGAGTTGATGGTC	1178	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12234.1	1481	6e-24	84 - 142	100	59 / 59	minus	ABC05939 ABC05940
JLOC1	JLOC1_8203.1	1923	3e-24	1450 - 1508	100	59 / 59	plus
Harvest21	ABC05939	1522	1e-24	1372 - 1430	100	59 / 59	plus	ABC05939
Harvest21	ABC05940	964	5e-23	656 - 714	98	58 / 59	plus	ABC05940
Harvest35	U35_2349	1255	3e-25	1179 - 1238	100	60 / 60	plus
Harvest35	U35_2350	964	5e-23	656 - 714	98	58 / 59	plus

Contig Sequence (1255 bp)

>U35_2349 1255 Hv_44K_v2
GGGAGGGTGATCCTGAAGCGCTACGTGACGGGGTTCCCCACCGAGGACGACATGGAGGTC
GTCCCCGCGACGGCGCGCCTGGCCGTGCCGCCCGGGTCGGCCGCCGTGGTGGTCAAGAAC
CTCTACCTCTCCTGCGACCCCTACATGCGCAGCCGGATGTCCCGGCACGACGAGCCCAGC
TACGTCCCGGACTTCGTCCAGGGGGAGGTGTTAACCACTCTGGGCGTAAGCAAGGTGGTG
GAATCCGGGCATCAGGATTACAAGGCCGGTGATCTGGTGTGGGGAATGACAGGATGTGAA
GAGTACACTTTGATCACGAACCTGCAGACACATTTCAAGATCAACCATCCTGAATTGCCG
CTGTCATACTACACAGGAGTTCTTGGCATGCCTGGCCTTACTGCCTATGTTGGATTTTTT
GACGTGGCCAAGCCAAAGAAGGGCGACTATGTCTTTGTGTCCGCAGCCTCAGGTGCCGTC
GGACAGCTTGTCGGGCAGCTTGCCAAGATCTCTGGCTGCTATGTGGTTGGTAGTGCCGGT
TCCGATGAGAAGGTCAACCTCCTAAAAACAAAGTTTGGGTTTGACGATGCCTTCAACTAC
AAGAAGGAGCAAGACCTGAACGCCACACTGAAGAGGTGCTTCCCGGAGGGCATCGACATC
TACTTCGAGAACGTGGGTGGCGCGATGCTGGACGCGGTGCTTCTCAACATGAGGCTGCAC
GGGCGGGTGTCTGTATGCGGGATGATCTCGCAGTACAACCTGGAGCAGCTCGATGGCGTG
CGCAACCTCTTCCACATCGTCGCCAAGCGCATCCGCATGGAGGGGTTCATCGTGATGGAC
CACTACGGTACCTACAGAAAGTTCGAAGAGGAGATGGCCGGCTACCTCAAGGAAGGGAAG
ATCACTTACGTGGAGGACGTCGCCGAGGGGATCGAGAGCTTCCCGTCGGCCCTCATTGGG
CTCTTCTACGGGCGCAACGTCGGAAAGCAGCTGGTGGCCGTCGCACGGGAGTGACGTCGC
ATGCCAGGAGCCCTCCTGGATCGAGAAGTGCTGATGTGCCTTCAGAGATCAGAATTCAGA
TATATATAGAGGCGTACTTAGTCCGGTTTGCTGGATGCAGCATCCTTTGAGCCAGCGTTT
GGAGAAACTTGGAGAAAACTGAATCCTGCTTAGGTGATCCAGGAAGCTGGAATGAACTAA
TAATGTTTACTAGTATTACAAAAGGGGAGTTGATGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g12470.1	346	0.0	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi4g39980.1	346	0.0
Arabidopsis v10	AT3G03080.1	350	4e-161	Zinc-binding dehydrogenase family protein \| chr3:698530-700278 REVERSE LENGTH=350