barSeed - Barley Seed Development Database

Probe CUST_7211_PI390587928

Source Contig U35_2354

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7211_PI390587928	Hv_44K_v2	ACCCCCGCTTTATCTGTTAGTAGGTAATGTGGAATAAAATCACACTGGGATAATATATAT	941	GeneList: paleturquoise MasterList: Wall_associated_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.927	7.079	1.695	0.708	0.177	0.210
Raw	4097.140	4019.393	819.734	588.961	46.280	61.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43523.1	1200	8e-25	1020 - 1079	100	60 / 60	plus
Harvest21	ABC01039	427	3e-25	336 - 395	100	60 / 60	plus	ABC01039
Harvest21	ABC01025	1001	2e-22	932 - 986	100	55 / 55	plus	ABC01025
Harvest35	U35_2354	1033	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1033 bp)

>U35_2354 1033 Hv_44K_v2
CACGAGCCAGCCTGCAGTAGGCAGCCACTACAGCCCCTGAAGAAGAGGCACGGATCACGG
ATGCCAAGCATGGCATCCAAGTCCAAGGGTCTTGTTGTGCTTGCTCTCCTGCTTGCTGCT
GCTATCCTCGTCGCCTCGGCTGATGAACACCCTCAGGCCAAGAAGGAAGAGAACGAGGCC
GGAGTAGAGAACTTCTTCCACGGTGGCGGAGGCCACCACGGACACGGCAGGGGAGGCCAC
GGCGGAGGAGGTTACGGCGGCGGGGGAGGCTACGGAGGAGGCGGCGGAGGCTACCCAGGC
GGTGGAGGAGGCTACGGCGGCGGTGGCGGCGGCTACCCTGGCCACGGCGGAGAAGGTGGT
GGAGGCTACGGCGGCGGTGGCGGCTACCCTGGCCACGGTGGGGAAGGTGGTGGAGGCTAC
GGCGGCGGTGGCGGCTATCCTGGCCACGGCGGAGAAGGTGGTGGAGGCTACGGCGGCGGT
GGCGGCTACCCTGGCCACGGTGGCGAAGGTGGTGGAGGCTACGGCGGCGGCGGCGGTGGC
TACCCGGGCCACGGAGGAGGAGGCGGCCACGGAGGCGGCAGATGTAAGTGGGGCTGCTGC
GGCCACGGGTTCCTTCACCATGGCTGCCGCTGCTGTGCGCGCGCCGACGAGGTTCCGGAG
GTCCGCAACTGAGCACACGTAACAATGCAGCCATGCATACGTACGTACGGTATAGGCTAG
CTGCATGCCTACCCTGGGTTGACTGTACGTCCATGACATTGCTCTGCACGCGTACGTGCA
TAGTAATTAAATTACTCGTAATATAAATAAACATTGTCCCTGATGAACAAAAGGAAGAGA
CCTTGTAGAACAGTGACCTTGTACGCGTTGCACAGTGACCTTGTAGAACACATGCATCCC
CTGTGTGTTCTTGCAAGCGTGTATGTATGTCTCGTATTAATACCCCCGCTTTATCTGTTA
GTAGGTAATGTGGAATAAAATCACACTGGGATAATATATATNAGCCTGGTTCTACTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_2354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None