barSeed - Barley Seed Development Database

Probe CUST_7209_PI390587928

Source Contig U35_2356

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7209_PI390587928	Hv_44K_v2	TGAAATGTCTATAAAAGATAATGCAGCGATCTTGAGAGGCTGCCGTGTTTGTGGAAAAAA	1299	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365141	1438	9e-22	1320 - 1374	100	55 / 55	plus	ABC06161 ABC39153
MLOC	MLOC_62855.1	1760	9e-22	1424 - 1478	100	55 / 55	plus	ABC06161 ABC39153
JLOC1	JLOC1_41158.1	1673	5e-22	1498 - 1552	100	55 / 55	plus
Harvest35	U35_2356	1370	3e-25	1300 - 1359	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_2356 1370 Hv_44K_v2
GCGTAAAGGGGACAGGCTTGGAAGACGGCGGAAGGGACTCTTGGGTCGCGTCGTCTCCAA
TCTTCCACTCTGACCGACTCCCGACCGATCTCCGCCGGAGCCCGCCCTACGCCGTCGCCG
ATGGTGTTCGCCGGCCGGCCGCTCCCCGTCCTCCTGCTCCTCCTTGTCGCCGGCGCGACC
GCCACCGACCAGATCTTCACCACCTCAGGTGTGCCGTTCGGGAAGAACTCGCGCGAGCCG
AGGTACCGCGTGGAGTACCACCCCGTCGATTCGCCCTACCACCCGGAGAATGGCCAGGAG
TCTGAACCAATGACTGACCACGAGGGGAGACATTACACCTGCTACCTACCAGTCGAAGAA
ACCAAGACCATGAAGTCGATTGTCCCACAGAATGCAACCAATATTATTATAGAAAGCGAA
CGGAAAGTTAAGCCAAAGGAGCCAGATGAACTGCTAGAGGTTCTCAAGGACCAGTGCTTC
TACAGGCATGAAGGTTGGTGGTCTTATGAGTTCTGCTACTATGGGAAAATCCGACAGGTT
CATGTAGAGAATGAGAAGGTTATCCAAGAGTATGTCCTAGGTGAATATGACCCTGATGCA
ACCGATGCTTACCATGACAATCACACCTCCGAGTCTGCTGATGACGATCATGTGAAAGAT
ACTTCTAAGAGGTACCATGTCCACGTGTACACAAATGGGACTGTCTGTGATCTCACAGAT
ATACCGCGGTACACAGAGGTTAGGTTTGTTTGTTCTGAGCCCACTGTGCTGATCAGTTCG
ATAAAGGAGATATCTTCCTGCAAATACGTCTTAACAGTCCAAAGCCCAATGCTCTGCAAG
AACCCGTTGTTTCAGCAGGAAAAGCGCACCTTCTTCATCCACTGCAACGAATCGCCTGCC
GAAGCAGAAGCTGAGGCCACCGGGGATGACGACTCTCTTCCGAAAGAAGCTCAGATGTCC
ATTGTTCCAGACCCCGATGAATTGCATTACTACGCAGCTTATGCCACCTGATTGCCCGCC
GGTCATGCTACCCTCATCTATCGAAGAGATAGCTGTTTTGGAGGTTGCAACGGCAAGTCT
TGACCATAGCAGCACTATATCCCTTGACTTGTTCTGTCTGACCCTGATCAGTGGCCACAA
CGCTCTTTGAGCGTATAGCAGGTCGAGGTCATCGAACTAGTGCTGATCATAGAGTAATGT
TAAGAGCAGAGAGGGTCGTTTCTTTCTGTACTATAGCACAATTTGGTGAAGGAGATATTT
GAGATTCACTGCCAGGCGGTTGGCATCACAAACATTTCTTGAAATGTCTATAAAAGATAA
TGCAGCGATCTTGAGAGGCTGCCGTGTTTGTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43710.1	299	5e-167	protein\|glucosidase II beta subunit-like domain containing protein, expressed
Brachypodium v1_2	Bradi1g30600.1	295	2e-177
Arabidopsis v10	AT5G35080.1	282	2e-77	INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:13354552-13356725 REVERSE LENGTH=282