barSeed - Barley Seed Development Database

Probe CUST_7205_PI390587928

Source Contig U35_2360

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7205_PI390587928	Hv_44K_v2	TTGGGATGTCTGAGCCATATATACATTCAGGGAGAAAAGAGAGTGGTTGTTCTACACAAA	1252	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.391	5.767	1.339	0.719	0.598	0.412
Raw	150.154	195.120	37.091	34.138	8.275	5.472

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15214.4	1472	7e-23	1232 - 1288	100	57 / 57	plus	ABC06455
MLOC	MLOC_15214.2	1492	7e-23	1377 - 1433	100	57 / 57	plus	ABC06455
JLOC1	JLOC1_10427.2	1859	4e-23	1336 - 1392	100	57 / 57	plus
JLOC1	JLOC1_10427.1	1863	4e-23	1340 - 1396	100	57 / 57	plus
Harvest21	ABC06455	1430	1e-23	1253 - 1309	100	57 / 57	plus	ABC06455
Harvest35	U35_2360	1430	3e-25	1253 - 1312	100	60 / 60	plus

Contig Sequence (1430 bp)

>U35_2360 1430 Hv_44K_v2
CGAAAATCCCCGTAGCATTTCCGAGAGCGGCCCTACAATGGCAGCCATCCTCGGGCGCGC
CGGCACCACCGCCACCGGCTGCTTCCGGCGGCACCATGAAGAAACCAGACGCCGCGGCCG
TAGGCGAAATGCGGTCGTCGTCGCGGCCGTGACCGGCACCGCGCCGCAGGAGGGGTCTCT
GGAGCGGCCGGCGTGGTCCGGGGAGACTCCGGTGTCGCGGCTCGTCGCCGCGCTCATCGC
CATCAAGCCGCTCTACTCCCTCATGAAGCTCGCCTCCCGCGAGGTCATCATCAGGACGGC
GGAGAAGTCCAACATCCCGTGGAGGGAGATGACGAAGAAGGTGCTGGAGTCTGACGTGTA
CGAGGTGTTCGAGAGGATAAGAGACCCCAACATCGTCTACCCTGACTATTATCTGAGCCC
ATTCCACGCCTATGACGAAGGGAACCTATCATGGCTGGCTGCAGCTGAGGCTGAGGCTGC
TACCCTGTCGATTGCAAAGAGGGCCATACCCGAGGCTACTACGATCGAAGAAGCGAACCG
GATTGTTCGGGGAAACTGGATGAATGCAATTGAGGAGCACCACCTCAAGTACTCGGGGGG
AAACTGCCAGATCAATGACATTTTGGACATTGGCTGCTCTGTGGGAGTGAGCACCAGATA
CCTGGCTGAGAAGTTCCCTTCGGCTAAGGCTGTCGGATTAGATCTATCGCCCTACTTCCT
GTCCGTGGCAGCACAGAAAGAAGAACAACTGTCTCGGCAAAACCCTATTCGTTGGGTTCA
TGCAAACGGTGAAGCGACTGGGTTGCCACCGAATTCATTCGACGTCGTCTCCCTTGCTTA
TGTGTGCCACGAGTGTCCAGCACGAGCAATAATCGGATTAGCGAAGGAAGCATTCAGACT
GCTTCGCCCAGGAGGAACCATCGCCTTAACAGACAACTCACCAAAGTCAAAAGTACTCCA
GGAACTATCACCCGTTCTGTTCACCCTGATGAAGAGCACTGAACCGTTCCTGGACGAGTA
CTACATGCTGGATCTGGAGGATGCGCTGAGCCAAGCAGGCTTCGTCAATGTGTGCTCCGT
GCTGACAGACCCCAGGCATAGAACGGTCACTGCCACGGTGCCCTACTGAGTACTGACTGG
ATTGTTGATCAGACCTTCGAATCAGGGCTACATCATCACCATGGTTCACCAAAGCAGAAT
TCTCTCTTCAGTGATTTGGCTAGTGTAAACAGTCATAAAAGCTTATAGCAACTTGGGATG
TCTGAGCCATATATACATTCAGGGAGAAAAGAGAGTGGTTGTTCTACACAAAAAAAAAAA
AAAAGCACGATAAACAGTAAGCACATAGCAAAAGAAATATGAATCTTTGTGGCTTCGANT
TATGACCAAAATTTGTAGGCTATTGCGAATTTGTGGGCCAAATACACCGA

Homology of Contig U35_2360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g10180.1	365	0.0	protein\|methyltransferase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g22740.1	374	0.0
Arabidopsis v10	None