barSeed - Barley Seed Development Database

Probe CUST_7202_PI390587928

Source Contig U35_2363

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7202_PI390587928	Hv_44K_v2	TACCTCATGGTCAGCTGCTACCCGTTCTTCGCCTACGCGGACAATGCCGGCGTCATCTCC	664	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.536	0.732	3.088	2.956	0.920	1.397
Raw	5.899	12.086	46.499	68.205	7.714	12.609

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356471	1829	7e-23	652 - 711	98	59 / 60	plus	ABC08970
MLOC	MLOC_65491.2	1727	7e-23	1007 - 1066	98	59 / 60	minus	ABC08970
MLOC	MLOC_65491.1	1906	7e-23	1174 - 1233	98	59 / 60	minus	ABC08970 ABC46436
JLOC1	JLOC1_43101.2	2255	4e-23	693 - 752	98	59 / 60	plus
JLOC1	JLOC1_43101.1	3606	4e-23	692 - 751	98	59 / 60	plus
Harvest21	ABC08970	1500	1e-23	259 - 318	98	59 / 60	plus	ABC08970
Harvest35	U35_2363	939	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (939 bp)

>U35_2363 939 Hv_44K_v2
TGTTGGCCTAGTGAACACTCTCCACCGCTTCGCTCCCCGCCGTGACAAACTCTGCTTTCT
CGCCCGCCGCCGCAAGCAGAGCATGGCTCCCCCCCGCGGCCTCCTCCTCGCCGCGGCATT
GTGCCTGCTCTTCCTCGCCGCCGCAGACGCGGGCACCGTGGGCGTGAACTGGGGGCGGGT
GGCGAACGACCTACCCAGCCCGGCGGCGGTGGTGCAGCTGCTCAAGCAGCACGGCATCGC
GCAGGTCAAGCTCTACGACACGGAGCCCGCCGTGCTGCGCGCGCTCGCCAACAGCGGCAT
CAAGGTGGTCGTCGCGCTGCCCAACGAGCAGGTCGCCGCGGCCGCCCGGCGCCCGTCGTA
CGCGCTGGCGTGGGTGCGCCGGAACGTCGCGGCCTACTACCCGGCCACGCAGATCCAGGG
CATCGCCGTCGGCAATGAGGTGTTCGCCACGGCCGCCAACGTCACGGCGCAGCTCGTCCC
GGCCATGATCAACGTGCACGCGGCCTTGGCCAGGCTCAGCATGGACAAGGCCGTCAAGGT
GTCGTCCCCCGTCGCGCTCACGGCGCTCGCCAACTCGTACCCGCCGTCCGCCGGCGTGTT
CAGGGAGGAGCTCTCGCAGTCGGTGATGAAGCCCATGCTCGACTTCCTGTCGCAGACCGG
CTCCTACCTCATGGTCAGCTGCTACCCGTTCTTCGCCTACGCGGACAATGCCGGCGTCAT
CTCCCTCGACTACGCGCTCTTCCGCCCCAACGCCGGCGAGCTCGACTCCGGGAGCGGGCT
CAAGTACTACAGCCTCCTGGACGCGCAGCTGGACGCCGTGTTCACGGCGGTGGGCAAGCT
GGGGAGCTACAACGGCGTGCACGTGGTGGTGTCGGAGACTGGGTGGCCGTCCAAGGGCGA
CGCCAAGGAGGTCGGCGCCGGCGCGGGCAACGCCGCGGC

Homology of Contig U35_2363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53200.2	489	4e-152	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g57610.1	496	6e-157
Arabidopsis v10	AT5G55180.2	465	2e-105	O-Glycosyl hydrolases family 17 protein \| chr5:22388834-22390561 FORWARD LENGTH=465