barSeed - Barley Seed Development Database

Probe CUST_7194_PI390587928

Source Contig U35_2374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7194_PI390587928	Hv_44K_v2	CCTGTCACCCGTTGATTACTCTCCAAATGCAAAGTTCATTTCCGCTTTGGTGGCAAAAAA	1002	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.128	1.330	1.367	1.043	0.511	0.455
Raw	1216.940	2228.467	2034.767	2421.271	419.691	408.794

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48054.1	618	9e-22	62 - 116	100	55 / 55	minus	ABC06221 ABC48970
JLOC1	JLOC1_30906.1	549	5e-22	432 - 486	100	55 / 55	plus
Harvest21	ABC48970	514	3e-25	444 - 503	100	60 / 60	plus	ABC48970
Harvest21	ABC52261	577	8e-21	206 - 260	98	54 / 55	plus
Harvest21	ABC06221	1098	8e-21	819 - 873	98	54 / 55	plus	ABC06221
Harvest21	ABC06219	766	8e-21	555 - 609	98	54 / 55	plus
Harvest35	U35_2374	1073	3e-25	1003 - 1062	100	60 / 60	plus
Harvest35	U35_2371	1690	8e-21	819 - 873	98	54 / 55	plus
Harvest35	U35_2369	767	8e-21	555 - 609	98	54 / 55	plus

Contig Sequence (1073 bp)

>U35_2374 1073 Hv_44K_v2
AACGTCTCTCACTCCAGTCTCAGGAAGCCAACCTAAACCCTAAGGAGCCCGTGGCTAACT
CTCCTCGCCCGACCCTTCAGAGAACGCGCGTCGTCACCTCTCCCTCTCCCTCTCCCTCTC
CCCTCTCGTCGCAAGATCCAACCCCACTCCCGTCGCCCGATCCAACCCCACTCCCGTCCC
CGTACACCCCGCCGCCGCCGCCGCGAATCCCGCCGGCGTCCACCCCGCGCACGCGTGCTC
TGCGCCTCTGTGTCTGCTCGACGGACTCCAGGACCTCCGGATCGGAGCCCCGCGCGCCTC
GCCATGGCGGCCAACGCGCTGAAGGCCCAGCTCAACGCGACAGATCGCTTCCAATTCTGA
CACCGGCCGGCGACAGGAGATCGGGCTCGCCAATCTCTCACCGGCTTCCCTCCGTCCCTG
CCCAAAGGCGGCTGCAGCGTCAAATCGCGCACCGAGAAGAGCTGGTCTGCTCGCGCTGCT
CTGCTCTGCTCGGTGGATGCGGGCCTGCGGCAGTGGCAGCGGTGGAGAAGGGAGGGGAGG
TAGGCATCGGGTGACCTCCGTGACGCTCTCGATGTTGGGGGAGAAGCCCGACCTGGTCTG
CGACCGGGCGACATGCTCGGGCAGGCGACGCGAACCAAAGACACTAAACAAGCGAAGCGA
ACCCCCTCTTCCTCCTCATGTCGCCATCCGCCGCCGCCGGCGAAACCCCGTCCGGGGAGC
CGCGGAGAGCAGCACCAGCGCTGAGGAGTCGCGGTGGCTTGCGGCCCTCTCTGAACCCGA
GCTCGTCCGTCCTCCACTTCCCTCGTAATCTCTCCTTCCGACCATCGATTTTTCAACCTT
CGATGGTTTCCTACAGGATTTGCTCATCAGCCTGAAGATGCTGGCCTGTCACCCGCTGTC
ACCCGCTGATTACTCTCCAAATGCAAAGTTCATTTCCGTCCTGTCACCCGCTGATTACTC
ACCCGCTGTCACCTACAGGATGGTTTCTTGCTTTATTTCCGTCCTGTCACCCGTTGATTA
CTCTCCAAATGCAAAGTTCATTTCCGCTTTGGTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None