barSeed - Barley Seed Development Database

Probe CUST_7189_PI390587928

Source Contig U35_10430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7189_PI390587928	Hv_44K_v2	TGCCCAGAATTCTTTGTAGGCATTAAGACAAACCTGATATTTTTGTGCTGCAATGATTTG	583	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.227	1.972	1.162	0.775	0.348	0.300
Raw	2000.470	2774.705	1429.497	1504.052	237.741	220.055

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44123.1	751	2e-24	630 - 689	100	60 / 60	plus	ABC23399
MLOC	MLOC_44123.2	754	2e-24	633 - 692	100	60 / 60	plus	ABC23399
JLOC1	JLOC1_28563.2	830	8e-25	632 - 691	100	60 / 60	plus
JLOC1	JLOC1_28563.1	833	8e-25	635 - 694	100	60 / 60	plus
Harvest21	ABC23399	674	3e-25	584 - 643	100	60 / 60	plus	ABC23399
Harvest35	U35_10430	674	3e-25	584 - 643	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_10430 674 Hv_44K_v2
AAAAGATGCTTATCAAGGTTGCAACCCAAGGAGTTGTCAGGTTGTTCAATGAGGTGAGCA
AGCGACAGACTAGGAAAGGTTTGAATCCATCAAGAAGTAAAGACGTCAAATCAGCTTTGG
CAAAACACTCTGTACCATCTAACGAAGGACAACAAGGGCAGGGATCTTCCAAGTTCTCAA
AGAATATTGGCAAAGGTGAAGATGAGCCAGGGTGGGCCCCCCTACGTGACACTTACATGC
TTGGTTCGAAATTGAAGGACTGGGATAAAGCACAGGATTCTGATGTGGCTAAATCGAGCG
AGGCCCCTTTGGACAACTTTTCTGATGATGAATAGGAAACAAAATCTATTCCCGTTTGCT
GTATGGATGGCGATTGATGCTTTTGGATGGCATCCAAGAGCGCAAGATTTTGGAGAGGGG
AAGCGTGTCTGTGATGTGGTTTTCTCTTACTAGGTTTCATTGCATACATCCAAAAGCCCA
AGATTTCTACATGCAATCCTTGTAGTTTTAGTTTGTCTTCATCCTTGTATCACAACAAAA
TTCTTGCAGAACTGTCGTCACAGCTTAATGAGTATAATTATTTTGCCCAGAATTCTTTGT
AGGCATTAAGACAAACCTGATATTTTTGTGCTGCAATGATTTGTTGTTGAAAATCCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_10430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g15350.1	302	1e-54
Arabidopsis v10	None