barSeed - Barley Seed Development Database

Probe CUST_7187_PI390587928

Source Contig U35_10432

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7187_PI390587928	Hv_44K_v2	CAGAACAATAAGGACAGAGGAGGCACTTCTCATATCCCTTCAATACTTCCAAGACCCCAT	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55585.1	1108	2e-24	454 - 513	100	60 / 60	plus	ABC47521
JLOC1	JLOC1_35870.1	1329	8e-25	547 - 606	100	60 / 60	plus
Harvest21	ABC21184	632	3e-25	482 - 541	100	60 / 60	plus
Harvest35	U35_10432	632	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_10432 632 Hv_44K_v2
GTGAATTCCGTGAAGGTGTAACATTGGGTGGGGATCGTTCAAAGGGTACACCTGTTGATG
TTGGGTTAAGTCAGAACGTTCTGGTTGAGCAAGTCCTAGAACAAGGAAAAAGGGTAACTG
TAGCCATGGGAACCAACAGAGACCTTACACCAGCTTGTGTAAGGAAAGTTGTTCCTCCGT
CCTCACCGAGCGAAGAAATGGGATCATATTGGGGCTATAAAGTCCGCTATGCTTCAAATT
TAAGTGGTGTTATCAATGATTCGCCATACAAGGAAGGATATGATCATATCATCGGCACTT
CAGAGCATGGCGAAACCATTATTTCATCTGAGCTAATCTTACCTTCATTCAGGCACCTTT
TAATTGCGTTTGGTGGATTGGCTGGTCTGGAAGAAAGCATCGAAGAGGACCCAAATCTGA
ATGGCAAAGGCGCAAATGATGTATTCCCATCTTATTTGAATACATGCCCCAACCAAGGTA
GCAGAACAATAAGGACAGAGGAGGCACTTCTCATATCCCTTCAATACTTCCAAGACCCCA
TCAGGCGGGCAGGGATCGTGACTTANAAGGTTNTATGCAGACACATGCAGATACAACATC
GCACTTCAAATGGAATGCTGGGTGTTCATGTC

Homology of Contig U35_10432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g17064.2	211	1e-105	protein\|expressed protein
Brachypodium v1_2	Bradi2g13510.1	363	2e-113
Arabidopsis v10	AT5G19300.1	398	1e-76	CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). \| chr5:6495593-6497987 FORWARD LENGTH=398