- Probe CUST_7185_PI390587928
- Source Contig U35_10434
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7185_PI390587928 | Hv_44K_v2 | ATAATGTAGAGCCACCTGCGAAGGTGACCAAAGAGGTTCCCAAAAAGATATCTGTTGCTG | 598 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.613 | 2.627 | 1.491 | 0.656 | 0.405 | 0.265 |
| Raw | 1355.493 | 1283.077 | 747.620 | 458.316 | 113.203 | 81.832 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68802.4 | 1459 | 2e-24 | 206 - 265 | 100 | 60 / 60 | plus | ABC10560 |
| MLOC | MLOC_68802.2 | 2131 | 2e-24 | 832 - 891 | 100 | 60 / 60 | plus | ABC10560 |
| MLOC | MLOC_68802.3 | 1877 | 2e-24 | 895 - 954 | 100 | 60 / 60 | plus | ABC10560 |
| MLOC | MLOC_68802.1 | 2275 | 2e-24 | 938 - 997 | 100 | 60 / 60 | plus | ABC10560 |
| JLOC1 | JLOC1_45557.2 | 1590 | 8e-25 | 127 - 186 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45557.1 | 2361 | 8e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21296 | 673 | 3e-25 | 599 - 658 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10434 | 673 | 3e-25 | 599 - 658 | 100 | 60 / 60 | plus |
Contig Sequence (673 bp)
>U35_10434 673 Hv_44K_v2 GGAGCGATGGCAACCCAAGCAGGAAGCCCGGCCGCTCCTCGTTTGAGTCCCCAAGTGATC TGCTCTGTATTTGTTGAGCAATATTACCATATTCTACATGAGACACCAGACCAGGCGCAC AAGTTTTATCAAGACGCAAGTAGGATTGGCCGGACAGGTTCTGATGGAGTCATGGAATAC GTAACAACATTGCCTGAGATCAGCAAGAAAATTATGGCCATGGACTTCAGCAAATACTTA ACAGAGATTGAGACTGCAGATTCAGTGTTATCTCACAATGGTGGTGTTCTCATTGTGGTT ACTGGATCATTGACCATGGTTGATGACTGCCAACGATTTACACAGTCGTTCTTCCTGGCA CCACAAGATGGTGGCGGCTATTTCGTTCTCAATGATATTTTTAGGTTGATAACACAAAGG AATCTCGAAAACGGAAAAGCTCAGAACGATGGGCCTGTTGCTCAAACAGTAGCAGTTCCT ACAGCTGTGGTGGTGGAGTGTCCGACTACTGACCCTGTTGCTGATGTGGATGTTCGAAAT CCCACTGTTAATGGCACAATTGTTCAAAGTAACCAGACTGCTAATGGAACTGTTGAAAAT AATGTAGAGCCACCTGCGAAGGTGACCAAAGAGGTTCCCAAAAAGATATCTGTTGCTGTT TCCCCCTCTCCTC
Homology of Contig U35_10434 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g30550.1 | 489 | 6e-70 | protein|RNA-binding protein-like, putative, expressed |
| Brachypodium v1_2 | Bradi1g59930.2 | 429 | 2e-78 | |
| Arabidopsis v10 | None |