barSeed - Barley Seed Development Database

Probe CUST_7178_PI390587928

Source Contig U35_22412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7178_PI390587928	Hv_44K_v2	TCCGTCGCTAGCGCTCGAAACAGATGCTGCGCATGACTCATGAGTGAATGATTTACATAC	496	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.564	0.822	0.940	1.704	1.188	2.231
Raw	73.612	161.715	167.597	476.892	115.367	237.790

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364906	2377	2e-24	2295 - 2354	100	60 / 60	plus	ABC17827
MLOC	MLOC_69434.1	2138	2e-24	4 - 63	100	60 / 60	minus	ABC17827
MLOC	MLOC_69434.2	1656	2e-24	4 - 63	100	60 / 60	minus	ABC17827
MLOC	MLOC_69434.3	1771	2e-24	4 - 63	100	60 / 60	minus	ABC17827
MLOC	MLOC_69434.4	2196	3e-21	1 - 54	100	54 / 54	minus	ABC17827
JLOC1	JLOC1_46002.2	1409	2e-21	1356 - 1409	100	54 / 54	plus
JLOC1	JLOC1_46002.1	1397	2e-21	1344 - 1397	100	54 / 54	plus
Harvest21	ABC24830	579	3e-25	26 - 85	100	60 / 60	minus
Harvest35	U35_22412	578	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_22412 578 Hv_44K_v2
CTTTTTCAAAAAGACGGGCGTCCCCGATCCCGTCGCCGGCCGCGGCGACAGCGTCGAGAT
CCCCGTGGTGCGGGCGCCCAACGAGCGCTTCGGCAGCTCGCGCAACATGCTGGCTCCGAC
GGCAGTTCCCGACCTGGACGAGATCGTGTCCGTCGTGGACGTCGACAGCCGGAGGTGAAC
GTGCAGAGGCGCCCAGCCCACACGCCGCGCCGGCAAGCCCTGCCATGGCAGGGGAAACGC
GGCACGCCGAGACATTGCTGGTGCCCGCCGGGGCTCTGTGCGCATCGAGGACGTACCGGC
TGGTTGCGCGGGCGGGCAGGCAGGCGCGCTCGTCTGATGCACGGTGACGGACACCACGCG
CTGTAATATCACGGCTGGCTTCCTTCCTCTGTAAACGGTACGAGCGGACGGGACGCGTCT
CCGGCGTGCTGTCGCGACATGTCATGTGAGATGCTACAAAGGTCGTTGGCCTCCCTCGTC
GTTTCTGCGTGATCGCTCCGTCGCTAGCGCTCGAAACAGATGCTGCGCATGACTCATGAG
TGAATGATTTACATACAATAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_22412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None