- Probe CUST_7174_PI390587928
- Source Contig U35_22416
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7174_PI390587928 | Hv_44K_v2 | GTTTTCGTGTTTGTGCGTGCCAAGAACATTGCATAAGAGTGTTGTGTTTTTGACTTTTTT | 392 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.039 | 3.368 | 1.084 | 1.120 | 0.236 | 0.297 |
| Raw | 144.052 | 207.062 | 54.283 | 89.207 | 5.334 | 8.489 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369677 | 1671 | 2e-24 | 1477 - 1536 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_79630.1 | 696 | 2e-24 | 441 - 500 | 100 | 60 / 60 | plus | None |
| MLOC | AK376225 | 1828 | 7e-23 | 1772 - 1828 | 100 | 57 / 57 | plus | None |
| JLOC1 | JLOC1_53028.1 | 603 | 8e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22416 | 484 | 3e-25 | 393 - 452 | 100 | 60 / 60 | plus |
Contig Sequence (484 bp)
>U35_22416 484 Hv_44K_v2 AGGGCGCCGTGCGCGTCCAGCGGTGCCAGTCGCAGGCGAGCGCGGCGTGCCCGTGGGGCG TGAGGCTGGACATGTCGAGCGCGTCCGTCCACGACAGCGAGTGCGGGTCGACGAGCACCA TGAGGACCGCGGCCACCAGCATGTACTGCTGGTCGGCGGCCGCGAACAGCACCGGCGTCG CGTGACGGCGGCACGGCACACGTGATCTCCGAGTCGAATCAGAAGAAGTGCTAGCGTGAT CAGTGGCCTGTAGGGACAAACAAGTTCAGTCAGTCCAGCACCGGGGCACTGAAGCTTATG TGACTCTAGCTAGTTGACAGTAGAAGGAGCTGAGGATGATGGTTTCAATGTGTGTGATGA GTGGTCGATCGTTCTAGCAAAGGGCTGATGACGTTTTCGTGTTTGTGCGTGCCAAGAACA TTGCATAAGAGTGTTGTGTTTTTGACTTTTTTTTTTTTTTGGTAAGGAAAAAAAAAAAAA AAAA
Homology of Contig U35_22416 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |