barSeed - Barley Seed Development Database

Probe CUST_7173_PI390587928

Source Contig U35_22417

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7173_PI390587928	Hv_44K_v2	ATATGGCATCACATTGAACCAATGGAAGTGTTTCGGAAGGTACCACAGGAACCCCATTTC	868	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.611	1.093	1.890	2.119	0.833	0.763
Raw	83.864	239.438	351.894	639.757	87.408	85.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364487	3265	2e-24	2393 - 2452	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.5	2319	2e-24	1445 - 1504	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.4	1672	2e-24	1286 - 1345	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.6	2255	2e-24	1355 - 1414	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.1	1549	2e-24	1250 - 1309	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.2	1666	2e-24	1367 - 1426	100	60 / 60	plus	ABC15741
JLOC1	JLOC1_8795.6	2245	8e-25	1366 - 1425	100	60 / 60	plus
JLOC1	JLOC1_8795.3	2164	8e-25	1285 - 1344	100	60 / 60	plus
Harvest21	ABC18598	1004	3e-25	869 - 928	100	60 / 60	plus
Harvest35	U35_22417	1004	3e-25	869 - 928	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_22417 1004 Hv_44K_v2
GATGCTTTCAAATGGTCAGCTTAATTCACCTGTATGTGGAACAGTTGGTGATGAAGCCCA
TGATATGCTTTTGACTGCAGTATTAAGAAAACAGAAAATGGATTCGTCCTGCATAAATAA
TGCTGTCCAGAAAACACAGGAAAGCCCGCTTGATGTCCAGCCACTCCAGGTAAAGAAATT
TAGTGTCAGACAAAAAGGTGGGGAAACACACCCTATTCAAGCACTTGAGGGAAATAGTGA
CACATTTGATAATATTCAGTTGAAAGGTAAAAGCAATAGCTCTTGTAAGGAAATTATTTG
TGCTTTGACTGCTTCGACGTGCAATGCCCCTTCACCGCTGGATAAGCAGGCAAGAGCAAC
TGATGCGGTGTCAAGAGGGGCTGATAGTAGCTCAAACACAAAGGTTTTTGCCTCTAAGAA
ATCAGCTGAAAAGAAAGGCGTCAAAGGTTTGTCTGGCCCACATAGCTCAGTGCATGGAAC
TAGGACTGTCCAGAAGAGAAGTGCAAAGAAAGTGGCAGGGCGACAGAAAGAATGCTTCAT
GGAAAGACAAGTGGACAGCAGAGGACCTCATACTCAGCAGCAGCTCAACATGGAGGAAAA
AGTTGGCGTAAATGACGGAACAAATCACGAACTGTTTCCTTTAATACCCCCAGGCTTCAA
ATTAATATGTAACGGGCAAGGTTTACTTCATGGGGAAAAAGTGGATGAGAGACCAATTCA
ACTACATATTCAGGATGCTGGGAGCTCACAGTGCACCATGGAGAACACTGCATTAAGGAG
CTGCTCAGCTGTTGGGACTTCTCTGCACCCACCTTTTCTTTCATGTCAGATCTCTGGTGA
GCGTTGTCCGTTCATCAAGACCTCATCCATATGGCATCACATTGAACCAATGGAAGTGTT
TCGGAAGGTACCACAGGAACCCCATTTCCTTCCACTTCAGCAATTTATGCCAGAACTGCG
TGAAGGAATGGCTATAGGTCTAATGGTGACATATGACAGCTTAG

Homology of Contig U35_22417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g35050.1	812	6e-52	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None